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znf576.2 zinc finger protein 576, tandem duplicate 2 [ Danio rerio (zebrafish) ]

Gene ID: 563587, updated on 2-Nov-2024

Summary

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Official Symbol
znf576.2provided by ZNC
Official Full Name
zinc finger protein 576, tandem duplicate 2provided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-1738
See related
AllianceGenome:ZFIN:ZDB-GENE-030131-1738
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fb79b01; wu:fb79b01; zgc:175096
Summary
Predicted to enable DNA binding activity and metal ion binding activity. Orthologous to human ZNF576 (zinc finger protein 576). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
all
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Genomic context

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See znf576.2 in Genome Data Viewer
Location:
chromosome: 16
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 16 NC_007127.7 (25163443..25170162)
105 previous assembly GRCz10 (GCF_000002035.5) 16 NC_007127.6 (25222451..25254813)

Chromosome 16 - NC_007127.7Genomic Context describing neighboring genes Neighboring gene trypsin-2-like Neighboring gene zinc finger protein 576, tandem duplicate 1 Neighboring gene wu:fe05a04 Neighboring gene hematopoietic cell signal transducer

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  4. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
zinc finger protein 576.2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001114425.2 → NP_001107897.1  zinc finger protein 576.2

    See identical proteins and their annotated locations for NP_001107897.1

    Status: VALIDATED

    Source sequence(s)
    BX571853, CU062628
    UniProtKB/TrEMBL
    A9JTF6
    Conserved Domains (3) summary
    sd00017
    Location:305 → 326
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:360 → 382
    zf-C2H2; Zinc finger, C2H2 type
    pfam15909
    Location:94 → 168
    zf-C2H2_8; C2H2-type zinc ribbon

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007127.7 Reference GRCz11 Primary Assembly

    Range
    25163443..25170162
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_068213983.1 → XP_068070084.1  zinc finger protein 576.2 isoform X1

Nucleotide Protein Strain
Heading Accession and Version

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