cc2d1b coiled-coil and C2 domain containing 1B [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: cc2d1bprovided by ZNC
Official Full Name: coiled-coil and C2 domain containing 1Bprovided by ZNC
Primary source: ZFIN:ZDB-GENE-030131-1426
See related: Ensembl:ENSDARG00000099445 AllianceGenome:ZFIN:ZDB-GENE-030131-1426
Gene type: protein coding
RefSeq status: MODEL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: fb71c02; wu:fb71c02; si:ch211-57g18.1
Summary: Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human CC2D1B (coiled-coil and C2 domain containing 1B). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs: human mouse all
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Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	2	NC_007113.7 (19236693..19272350)
105	previous assembly	GRCz10 (GCF_000002035.5)	2	NC_007113.6 (19587436..19623318)

Chromosome 2 - NC_007113.7 Genomic Context describing neighboring genes

Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Submit: New GeneRIF Correction

Function	Evidence Code	Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific	IBA Inferred from Biological aspect of Ancestor more info
enables DNA-binding transcription repressor activity, RNA polymerase II-specific	IEA Inferred from Electronic Annotation more info
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding	IBA Inferred from Biological aspect of Ancestor more info

Process	Evidence Code	Pubs
involved_in regulation of transcription by RNA polymerase II	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
is_active_in nucleus	IBA Inferred from Biological aspect of Ancestor more info

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The following sections contain reference sequences that belong to a specific genome build. Explain

XM_005171198.5 → XP_005171255.1 coiled-coil and C2 domain-containing protein 1B isoform X1

UniProtKB/TrEMBL

A0A0R4ILN1, A0A0R4IRG6, A0A0R4IXS1, A0A8M2BIW6

Related

ENSDARP00000140305.1, ENSDART00000166292.2

Conserved Domains (3) summary

smart00685
Location:536 → 594

DM14; Repeats in fly CG4713, worm Y37H9A.3 and human FLJ20241

cd08690
Location:695 → 852

C2_Freud-1; C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1)

pfam17061
Location:121 → 282

PARM; PARM
XM_005171199.5 → XP_005171256.1 coiled-coil and C2 domain-containing protein 1B isoform X2

UniProtKB/TrEMBL

A0A8M2BIF0

Conserved Domains (3) summary

smart00685
Location:535 → 593

DM14; Repeats in fly CG4713, worm Y37H9A.3 and human FLJ20241

cd08690
Location:694 → 851

C2_Freud-1; C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1)

pfam17061
Location:121 → 282

PARM; PARM
XM_009298476.4 → XP_009296751.1 coiled-coil and C2 domain-containing protein 1B isoform X3

UniProtKB/TrEMBL

A0A8M3APN0

Conserved Domains (2) summary

smart00685
Location:522 → 580

DM14; Repeats in fly CG4713, worm Y37H9A.3 and human FLJ20241

cd08690
Location:681 → 838

C2_Freud-1; C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1)
XM_068213801.1 → XP_068069902.1 coiled-coil and C2 domain-containing protein 1B isoform X2