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LOC563780 uncharacterized LOC563780 [ Danio rerio (zebrafish) ]

Gene ID: 563780, updated on 17-Sep-2024

Summary

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Gene symbol
LOC563780
Gene description
uncharacterized LOC563780
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Orthologs
all
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Genomic context

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See LOC563780 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 11 NC_007122.7 (18255857..18271019)
105 previous assembly GRCz10 (GCF_000002035.5) 11 NC_007122.6 (18002475..18027295, complement)

Chromosome 11 - NC_007122.7Genomic Context describing neighboring genes Neighboring gene transmembrane and coiled-coil domain family 1b Neighboring gene musculoskeletal, embryonic nuclear protein 1b Neighboring gene STIM activating enhance Neighboring gene Scm like with four mbt domains 1 Neighboring gene protein kinase C, delta b

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

General protein information

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Preferred Names
uncharacterized protein LOC563780

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007122.7 Reference GRCz11 Primary Assembly

    Range
    18255857..18271019
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021479786.2 → XP_021335461.1  uncharacterized protein LOC563780

    UniProtKB/TrEMBL
    A0A8M9QI12
    Conserved Domains (1) summary
    pfam13837
    Location:4 → 89
    Myb_DNA-bind_4; Myb/SANT-like DNA-binding domain

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394814.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    179205..194367
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021472469.2 → XP_021328144.1  uncharacterized protein LOC563780

    UniProtKB/TrEMBL
    A0A8M9QI12
    Conserved Domains (1) summary
    pfam13837
    Location:4 → 89
    Myb_DNA-bind_4; Myb/SANT-like DNA-binding domain
Nucleotide Protein
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