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si:ch211-154o6.3 si:ch211-154o6.3 [ Danio rerio (zebrafish) ]

Gene ID: 563854, updated on 19-Jun-2024

Summary

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Official Symbol
si:ch211-154o6.3provided by ZNC
Official Full Name
si:ch211-154o6.3provided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-1030
See related
Ensembl:ENSDARG00000099846 AllianceGenome:ZFIN:ZDB-GENE-030131-1030
Gene type
protein coding
RefSeq status
PREDICTED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fb57e01; wu:fb57e01; si:ch1073-327m5.1
Summary
Predicted to enable histone binding activity. Predicted to be involved in histone H3-K4 methylation. Predicted to be part of Set1C/COMPASS complex. [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
all
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Genomic context

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See si:ch211-154o6.3 in Genome Data Viewer
Location:
chromosome: 16
Exon count:
14
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 16 NC_007127.7 (21698990..21737757)
105 previous assembly GRCz10 (GCF_000002035.5) 16 NC_007127.6 (21894738..21933505)

Chromosome 16 - NC_007127.7Genomic Context describing neighboring genes Neighboring gene guanine nucleotide binding protein-like 1 Neighboring gene zinc finger protein 384 b Neighboring gene si:ch211-154o6.4 Neighboring gene COP9 constitutive photomorphogenic homolog subunit 7A

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables U3 snoRNA binding IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
uncharacterized protein LOC563854

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001045031.1 → NP_001038496.1  uncharacterized protein LOC563854

    See identical proteins and their annotated locations for NP_001038496.1

    Status: PREDICTED

    Source sequence(s)
    BX294670
    UniProtKB/TrEMBL
    Q1LXQ1
    Related
    ENSDARP00000145171.1, ENSDART00000181036.1
    Conserved Domains (3) summary
    COG2319
    Location:136 → 378
    WD40; WD40 repeat [General function prediction only]
    sd00039
    Location:147 → 181
    7WD40; WD40 repeat [structural motif]
    cl02567
    Location:137 → 315
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007127.7 Reference GRCz11 Primary Assembly

    Range
    21698990..21737757
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021466714.1 → XP_021322389.1  uncharacterized protein LOC563854 isoform X1

    UniProtKB/TrEMBL
    A0A8M9PD56
    Conserved Domains (2) summary
    sd00039
    Location:38 → 72
    7WD40; WD40 repeat [structural motif]
    cl25539
    Location:28 → 206
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394960.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    80117..117885
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

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