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wu:fa26c03 wu:fa26c03 [ Danio rerio (zebrafish) ]

Gene ID: 564979, updated on 17-Aug-2024

Summary

Official Symbol
wu:fa26c03provided by ZNC
Official Full Name
wu:fa26c03provided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-5289
See related
Ensembl:ENSDARG00000074306 AllianceGenome:ZFIN:ZDB-GENE-030131-5289
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
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Genomic context

See wu:fa26c03 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
8
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 12 NC_007123.7 (16691584..16694092, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 12 NC_007123.6 (16569710..16572218, complement)

Chromosome 12 - NC_007123.7Genomic Context describing neighboring genes Neighboring gene si:dkey-239j18.3 Neighboring gene cathepsin Lb Neighboring gene Cathepsin L1-like Neighboring gene wu:fb36g12

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General protein information

Preferred Names
uncharacterized protein LOC564979

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001105115.2NP_001098585.1  uncharacterized protein LOC564979 precursor

    See identical proteins and their annotated locations for NP_001098585.1

    Status: VALIDATED

    Source sequence(s)
    BX465840
    UniProtKB/TrEMBL
    A0A8M1NFR7, A7MCR7, A8E587
    Related
    ENSDARP00000047915.4, ENSDART00000047916.6
    Conserved Domains (2) summary
    smart00848
    Location:2886
    Inhibitor_I29; Cathepsin propeptide inhibitor domain (I29)
    pfam00112
    Location:115335
    Peptidase_C1; Papain family cysteine protease

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007123.7 Reference GRCz11 Primary Assembly

    Range
    16691584..16694092 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)