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si:ch211-216l23.2 si:ch211-216l23.2 [ Danio rerio (zebrafish) ]

Gene ID: 565061, updated on 17-Sep-2024

Summary

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Official Symbol
si:ch211-216l23.2provided by ZNC
Official Full Name
si:ch211-216l23.2provided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-3806
See related
Ensembl:ENSDARG00000069122 AllianceGenome:ZFIN:ZDB-GENE-030131-3806
Gene type
protein coding
RefSeq status
PREDICTED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fc54e09; fy42h12; wu:fc54e09; wu:fy42h12
Orthologs
all
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Genomic context

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See si:ch211-216l23.2 in Genome Data Viewer
Location:
chromosome: 18
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 18 NC_007129.7 (17754494..17775588)
105 previous assembly GRCz10 (GCF_000002035.5) 18 NC_007129.6 (17765409..17786522)

Chromosome 18 - NC_007129.7Genomic Context describing neighboring genes Neighboring gene proteasome activator subunit 3 interacting protein 1 Neighboring gene ring finger and SPRY domain containing 1 Neighboring gene uncharacterized LOC101885646 Neighboring gene zinc finger protein 423 Neighboring gene si:ch211-212o1.2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. 15000 unique zebrafish EST clusters and their future use in microarray for profiling gene expression patterns during embryogenesis. Lo J, et al. Genome Res, 2003 Mar. PMID 12618376, Free PMC Article
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Clone Names

  • MGC162747

General protein information

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Preferred Names
uncharacterized protein LOC565061

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001045069.1 → NP_001038534.1  uncharacterized protein LOC565061

    See identical proteins and their annotated locations for NP_001038534.1

    Status: PREDICTED

    Source sequence(s)
    BX470162
    UniProtKB/TrEMBL
    A0A8M1N9Z2, Q1LX65
    Related
    ENSDARP00000120005.1, ENSDART00000135236.3
    Conserved Domains (1) summary
    PHA03307
    Location:280 → 471
    PHA03307; transcriptional regulator ICP4; Provisional

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007129.7 Reference GRCz11 Primary Assembly

    Range
    17754494..17775588
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005159113.4 → XP_005159170.1  uncharacterized protein LOC565061 isoform X1

    See identical proteins and their annotated locations for XP_005159170.1

    UniProtKB/TrEMBL
    A0A8M1N9Z2, Q1LX65
    Conserved Domains (1) summary
    PHA03307
    Location:280 → 471
    PHA03307; transcriptional regulator ICP4; Provisional

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018395019.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    10012..31059
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

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