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si:dkey-63j12.4 si:dkey-63j12.4 [ Danio rerio (zebrafish) ]

Gene ID: 565231, updated on 17-Aug-2024

Summary

Official Symbol
si:dkey-63j12.4provided by ZNC
Official Full Name
si:dkey-63j12.4provided by ZNC
Primary source
ZFIN:ZDB-GENE-040724-17
See related
Ensembl:ENSDARG00000089556 AllianceGenome:ZFIN:ZDB-GENE-040724-17
Gene type
protein coding
RefSeq status
PREDICTED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
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Genomic context

See si:dkey-63j12.4 in Genome Data Viewer
Location:
chromosome: 20
Exon count:
4
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 20 NC_007131.7 (9751484..9760446, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 20 NC_007131.6 (9764348..9773171, complement)

Chromosome 20 - NC_007131.7Genomic Context describing neighboring genes Neighboring gene prostaglandin E receptor 2b (subtype EP2) Neighboring gene uncharacterized LOC108180218 Neighboring gene proteasome 26S subunit, ATPase 6 Neighboring gene cell growth regulator with ring finger domain 1

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General protein information

Preferred Names
uncharacterized protein LOC565231

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001128721.1NP_001122193.1  uncharacterized protein LOC565231

    See identical proteins and their annotated locations for NP_001122193.1

    Status: PREDICTED

    Source sequence(s)
    BX571831
    UniProtKB/TrEMBL
    A3KQ91, Q5VSD1
    Related
    ENSDARP00000126889.1, ENSDART00000152239.3
    Conserved Domains (1) summary
    cl24015
    Location:132
    MULE; MULE transposase domain

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007131.7 Reference GRCz11 Primary Assembly

    Range
    9751484..9760446 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005160409.4XP_005160466.1  uncharacterized protein LOC565231 isoform X1

    See identical proteins and their annotated locations for XP_005160466.1

    UniProtKB/TrEMBL
    A3KQ91, Q5VSD1
    Related
    ENSDARP00000095706.3, ENSDART00000104936.6
    Conserved Domains (1) summary
    cl24015
    Location:132
    MULE; MULE transposase domain

Reference GRCz11 ALT_DRER_TU_2

Genomic

  1. NW_018395343.1 Reference GRCz11 ALT_DRER_TU_2

    Range
    18306..21644 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)