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gpatch8 G patch domain containing 8 [ Danio rerio (zebrafish) ]

Gene ID: 565404, updated on 2-Nov-2024

Summary

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Official Symbol
gpatch8provided by ZNC
Official Full Name
G patch domain containing 8provided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-6966
See related
Ensembl:ENSDARG00000059768 AllianceGenome:ZFIN:ZDB-GENE-030131-6966
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
gpatc8; fa12a04; fb30h12; wu:fa12a04; wu:fb30h12; wu:fj32a09
Summary
Predicted to enable metal ion binding activity and nucleic acid binding activity. Predicted to be active in nucleus. Orthologous to human GPATCH8 (G-patch domain containing 8). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
human mouse all
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Genomic context

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See gpatch8 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 3 NC_007114.7 (37663614..37699997, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 3 NC_007114.6 (37521756..37558134, complement)

Chromosome 3 - NC_007114.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC108182894 Neighboring gene golgi SNAP receptor complex member 2 Neighboring gene uncharacterized LOC137490682 Neighboring gene mitogen-activated protein kinase kinase kinase 14a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. The zebrafish gene map defines ancestral vertebrate chromosomes. Woods IG, et al. Genome Res, 2005 Sep. PMID 16109975, Free PMC Article
  2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
G patch domain-containing protein 8

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001328037.1 → NP_001314966.1  G patch domain-containing protein 8

    Status: VALIDATED

    Source sequence(s)
    BX640549, CR388062
    UniProtKB/TrEMBL
    A0A8M1P9F2, I3IS56
    Related
    ENSDARP00000125720.1, ENSDART00000151193.3
    Conserved Domains (2) summary
    pfam01585
    Location:41 → 83
    G-patch; G-patch domain
    pfam12171
    Location:137 → 164
    zf-C2H2_jaz; Zinc-finger double-stranded RNA-binding

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007114.7 Reference GRCz11 Primary Assembly

    Range
    37663614..37699997 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_068217359.1 → XP_068073460.1  G patch domain-containing protein 8 isoform X1

    Related
    ENSDARP00000155610.1, ENSDART00000185858.1

  2. XM_068217357.1 → XP_068073458.1  G patch domain-containing protein 8 isoform X1

  3. XM_021471027.2 → XP_021326702.1  G patch domain-containing protein 8 isoform X2

    UniProtKB/TrEMBL
    A0A8M9P7K7
    Conserved Domains (2) summary
    pfam12171
    Location:58 → 85
    zf-C2H2_jaz; Zinc-finger double-stranded RNA-binding
    cl25732
    Location:4 → 126
    SMC_N; RecF/RecN/SMC N terminal domain

  4. XM_021470992.2 → XP_021326667.1  G patch domain-containing protein 8 isoform X1

    UniProtKB/TrEMBL
    A0A2R8RXW4, A0A8M9P7I3
    Conserved Domains (2) summary
    pfam12171
    Location:74 → 101
    zf-C2H2_jaz; Zinc-finger double-stranded RNA-binding
    cl25732
    Location:20 → 142
    SMC_N; RecF/RecN/SMC N terminal domain

  5. XM_021471015.2 → XP_021326690.1  G patch domain-containing protein 8 isoform X2

    UniProtKB/TrEMBL
    A0A8M9P7K7
    Conserved Domains (2) summary
    pfam12171
    Location:58 → 85
    zf-C2H2_jaz; Zinc-finger double-stranded RNA-binding
    cl25732
    Location:4 → 126
    SMC_N; RecF/RecN/SMC N terminal domain

  6. XM_068217358.1 → XP_068073459.1  G patch domain-containing protein 8 isoform X1

  7. XM_068217362.1 → XP_068073463.1  G patch domain-containing protein 8 isoform X2

Nucleotide Protein Strain
Heading Accession and Version

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