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si:ch211-114c12.5 si:ch211-114c12.5 [ Danio rerio (zebrafish) ]

Gene ID: 565476, updated on 18-Sep-2024

Summary

Official Symbol
si:ch211-114c12.5provided by ZNC
Official Full Name
si:ch211-114c12.5provided by ZNC
Primary source
ZFIN:ZDB-GENE-060526-13
See related
Ensembl:ENSDARG00000092931 AllianceGenome:ZFIN:ZDB-GENE-060526-13
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary
Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in protein ubiquitination. Predicted to be active in cytoplasm. [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
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Genomic context

See si:ch211-114c12.5 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 5 NC_007116.7 (24102408..24112158, complement)

Chromosome 5 - NC_007116.7Genomic Context describing neighboring genes Neighboring gene G protein pathway suppressor 2 Neighboring gene tumor protein p53 Neighboring gene capping protein (actin filament), gelsolin-like a Neighboring gene si:ch211-114c12.2

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General gene information

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables ubiquitin protein ligase activity IBA
Inferred from Biological aspect of Ancestor
more info
 
Process Evidence Code Pubs
involved_in innate immune response IBA
Inferred from Biological aspect of Ancestor
more info
 
Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
 

General protein information

Preferred Names
E3 ubiquitin-protein ligase TRIM39

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007116.7 Reference GRCz11 Primary Assembly

    Range
    24102408..24112158 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021476347.2XP_021332022.1  E3 ubiquitin-protein ligase TRIM39

    UniProtKB/TrEMBL
    A0A8M9PKM7
    Related
    ENSDARP00000116272.1, ENSDART00000131595.2
    Conserved Domains (1) summary
    cd13733
    Location:241398
    SPRY_PRY_C-I_1; PRY/SPRY domain in tripartite motif-containing (TRIM) proteins, including TRIM5, TRIM6, TRIM7, TRIM10, TRIM11, TRIM17, TRIM20, TRIM21, TRIM27, TRIM35, TRIM38, TRIM41, TRIM50, TRIM58, TRIM60, TRIM62, TRIM69, TRIM72, NF7 and bloodthirsty

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394575.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    107377..118033 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_068218226.1XP_068074327.1  E3 ubiquitin-protein ligase TRIM39