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btbd16 BTB (POZ) domain containing 16 [ Danio rerio (zebrafish) ]

Gene ID: 565632, updated on 17-Sep-2024

Summary

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Official Symbol
btbd16provided by ZNC
Official Full Name
BTB (POZ) domain containing 16provided by ZNC
Primary source
ZFIN:ZDB-GENE-100513-3
See related
Ensembl:ENSDARG00000027710 AllianceGenome:ZFIN:ZDB-GENE-100513-3
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary
Orthologous to human BTBD16 (BTB domain containing 16). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
human mouse all
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Genomic context

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See btbd16 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
18
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 12 NC_007123.7 (11601562..11649666, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 12 NC_007123.6 (11558389..11611387, complement)

Chromosome 12 - NC_007123.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC137490434 Neighboring gene uncharacterized LOC137496794 Neighboring gene pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1b Neighboring gene WAPL cohesin release factor b Neighboring gene atonal bHLH transcription factor 1c

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
BTB/POZ domain-containing protein 16

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007123.7 Reference GRCz11 Primary Assembly

    Range
    11601562..11649666 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009306531.4 → XP_009304806.1  BTB/POZ domain-containing protein 16 isoform X1

    See identical proteins and their annotated locations for XP_009304806.1

    UniProtKB/TrEMBL
    A0A8M3BE27, E7F050, F8W3K7
    Conserved Domains (1) summary
    smart00875
    Location:284 → 366
    BACK; BTB And C-terminal Kelch

  2. XM_703976.8 → XP_709068.4  BTB/POZ domain-containing protein 16 isoform X1

    See identical proteins and their annotated locations for XP_709068.4

    UniProtKB/TrEMBL
    A0A8M3BE27, E7F050, F8W3K7
    Related
    ENSDARP00000124375.1, ENSDART00000149713.2
    Conserved Domains (1) summary
    smart00875
    Location:284 → 366
    BACK; BTB And C-terminal Kelch

  3. XM_068224736.1 → XP_068080837.1  BTB/POZ domain-containing protein 16 isoform X2

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394833.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    111517..158612 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_068218665.1 → XP_068074766.1  BTB/POZ domain-containing protein 16 isoform X1

Nucleotide Protein Strain
Heading Accession and Version

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