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hsf2bp heat shock transcription factor 2 binding protein [ Danio rerio (zebrafish) ]

Gene ID: 565831, updated on 28-Oct-2024

Summary

Official Symbol
hsf2bpprovided by ZNC
Official Full Name
heat shock transcription factor 2 binding proteinprovided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-1458
See related
Ensembl:ENSDARG00000035080 AllianceGenome:ZFIN:ZDB-GENE-030131-1458
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fb72c09; wu:fb72c09; si:ch211-237a6.7
Summary
Predicted to be active in cytosol. Human ortholog(s) of this gene implicated in primary ovarian insufficiency 19. Orthologous to human HSF2BP (heat shock transcription factor 2 binding protein). [provided by Alliance of Genome Resources, Oct 2024]
Orthologs
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Genomic context

See hsf2bp in Genome Data Viewer
Location:
chromosome: 1
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 1 NC_007112.7 (29101803..29141097, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 1 NC_007112.6 (28306997..28335318, complement)

Chromosome 1 - NC_007112.7Genomic Context describing neighboring genes Neighboring gene cystathionine beta-synthase a Neighboring gene crystallin, alpha A Neighboring gene ankyrin repeat domain 10a Neighboring gene zgc:173948 Neighboring gene cysteinyl-tRNA synthetase 2, mitochondrial

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General protein information

Preferred Names
heat shock factor 2-binding protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001386638.1NP_001373567.1  heat shock factor 2-binding protein

    Status: VALIDATED

    Source sequence(s)
    BX248514
    UniProtKB/TrEMBL
    A0A8M6YYV8, A0A8M9QDB2
    Related
    ENSDARP00000070028.4, ENSDART00000075546.5

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007112.7 Reference GRCz11 Primary Assembly

    Range
    29101803..29141097 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_068220433.1XP_068076534.1  heat shock factor 2-binding protein isoform X1

    Related
    ENSDARP00000114662.1, ENSDART00000133246.3

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394488.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    194363..227513 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)