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ripor1 RHO family interacting cell polarization regulator 1 [ Danio rerio (zebrafish) ]

Gene ID: 566573, updated on 2-Nov-2024

Summary

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Official Symbol
ripor1provided by ZNC
Official Full Name
RHO family interacting cell polarization regulator 1provided by ZNC
Primary source
ZFIN:ZDB-GENE-050420-32
See related
Ensembl:ENSDARG00000062178 AllianceGenome:ZFIN:ZDB-GENE-050420-32
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fam65a; si:dkey-45h7.2
Summary
Orthologous to human RIPOR1 (RHO family interacting cell polarization regulator 1). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
human mouse all
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Genomic context

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See ripor1 in Genome Data Viewer
Location:
chromosome: 18
Exon count:
26
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 18 NC_007129.7 (22139229..22283929)
105 previous assembly GRCz10 (GCF_000002035.5) 18 NC_007129.6 (22150184..22294863)

Chromosome 18 - NC_007129.7Genomic Context describing neighboring genes Neighboring gene zgc:158868 Neighboring gene C-signal-like Neighboring gene uncharacterized LOC110438091 Neighboring gene uncharacterized LOC137488278 Neighboring gene CCCTC-binding factor (zinc finger protein) Neighboring gene capping protein regulator and myosin 1 linker 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Hematopoietic gene expression profile in zebrafish kidney marrow. Song HD, et al. Proc Natl Acad Sci U S A, 2004 Nov 16. PMID 15520368, Free PMC Article
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  4. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
rho family-interacting cell polarization regulator 1
Names
family with sequence similarity 65, member A

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001045108.2 → NP_001038573.1  rho family-interacting cell polarization regulator 1

    See identical proteins and their annotated locations for NP_001038573.1

    Status: PROVISIONAL

    Source sequence(s)
    BX088593, BX323070
    UniProtKB/TrEMBL
    A0A8M2B5L5, Q1LXK2
    Related
    ENSDARP00000155771.1, ENSDART00000183961.1
    Conserved Domains (3) summary
    pfam13646
    Location:961 → 1047
    HEAT_2; HEAT repeats
    pfam15903
    Location:16 → 362
    PL48; Filopodia upregulated, FAM65
    sd00044
    Location:956 → 986
    HEAT; HEAT repeat [structural motif]

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007129.7 Reference GRCz11 Primary Assembly

    Range
    22139229..22283929
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009293580.4 → XP_009291855.1  rho family-interacting cell polarization regulator 1 isoform X3

    See identical proteins and their annotated locations for XP_009291855.1

    UniProtKB/TrEMBL
    A0A8M3AUV4
    Conserved Domains (3) summary
    pfam13646
    Location:1009 → 1095
    HEAT_2; HEAT repeats
    pfam15903
    Location:16 → 361
    PL48; Filopodia upregulated, FAM65
    sd00044
    Location:1004 → 1034
    HEAT; HEAT repeat [structural motif]

  2. XM_009293579.4 → XP_009291854.1  rho family-interacting cell polarization regulator 1 isoform X3

    See identical proteins and their annotated locations for XP_009291854.1

    UniProtKB/TrEMBL
    A0A8M3AUV4
    Conserved Domains (3) summary
    pfam13646
    Location:1009 → 1095
    HEAT_2; HEAT repeats
    pfam15903
    Location:16 → 361
    PL48; Filopodia upregulated, FAM65
    sd00044
    Location:1004 → 1034
    HEAT; HEAT repeat [structural motif]

  3. XM_005159126.5 → XP_005159183.1  rho family-interacting cell polarization regulator 1 isoform X5

    See identical proteins and their annotated locations for XP_005159183.1

    UniProtKB/TrEMBL
    A0A8M2B5L5, Q1LXK2
    Related
    ENSDARP00000083982.5, ENSDART00000089549.7
    Conserved Domains (3) summary
    pfam13646
    Location:961 → 1047
    HEAT_2; HEAT repeats
    pfam15903
    Location:16 → 362
    PL48; Filopodia upregulated, FAM65
    sd00044
    Location:956 → 986
    HEAT; HEAT repeat [structural motif]

  4. XM_009293578.4 → XP_009291853.1  rho family-interacting cell polarization regulator 1 isoform X2

    UniProtKB/TrEMBL
    A0A8M3AKD8
    Conserved Domains (3) summary
    pfam13646
    Location:1024 → 1110
    HEAT_2; HEAT repeats
    pfam15903
    Location:31 → 376
    PL48; Filopodia upregulated, FAM65
    sd00044
    Location:1019 → 1049
    HEAT; HEAT repeat [structural motif]

  5. XM_021467681.2 → XP_021323356.1  rho family-interacting cell polarization regulator 1 isoform X1

    UniProtKB/TrEMBL
    A0A8M9PM75
    Conserved Domains (3) summary
    sd00044
    Location:1032 → 1062
    HEAT; HEAT repeat [structural motif]
    pfam15903
    Location:44 → 389
    PL48; Filopodia upregulated, FAM65
    cl26104
    Location:1037 → 1145
    HEAT_2; HEAT repeats

  6. XM_021467682.2 → XP_021323357.1  rho family-interacting cell polarization regulator 1 isoform X4

    UniProtKB/TrEMBL
    A0A8M9P149
    Conserved Domains (3) summary
    sd00044
    Location:984 → 1014
    HEAT; HEAT repeat [structural motif]
    pfam15903
    Location:44 → 390
    PL48; Filopodia upregulated, FAM65
    cl26104
    Location:989 → 1097
    HEAT_2; HEAT repeats

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018395025.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    77639..135321
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

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