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si:dkey-164f24.2 si:dkey-164f24.2 [ Danio rerio (zebrafish) ]

Gene ID: 566607, updated on 27-Mar-2024

Summary

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Official Symbol
si:dkey-164f24.2provided by ZNC
Official Full Name
si:dkey-164f24.2provided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-7035
See related
Ensembl:ENSDARG00000089418 AllianceGenome:ZFIN:ZDB-GENE-030131-7035
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fk66f10; wu:fk66f10
Orthologs
all
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Genomic context

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See si:dkey-164f24.2 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
13
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 8 NC_007119.7 (32482744..32497823, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 8 NC_007119.6 (32473512..32488609, complement)

Chromosome 8 - NC_007119.7Genomic Context describing neighboring genes Neighboring gene adhesion G-protein coupled receptor F1-like Neighboring gene adhesion G protein-coupled receptor F5-like Neighboring gene Rieske domain-containing protein-like Neighboring gene neuronal calcium sensor 1b Neighboring gene uncharacterized LOC101882414

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Evolution of complexity in the zebrafish synapse proteome. Bayés À, et al. Nat Commun, 2017 Mar 2. PMID 28252024, Free PMC Article
  2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  4. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

General protein information

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Preferred Names
uncharacterized protein LOC566607; uncharacterized protein si:dkey-164f24.2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001386315.1 → NP_001373244.1  uncharacterized protein LOC566607

    Status: VALIDATED

    Source sequence(s)
    BC154804, BX545917, BX548021, DN857445
    UniProtKB/TrEMBL
    A0A286Y8V3, A0A8M2BEM4

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007119.7 Reference GRCz11 Primary Assembly

    Range
    32482744..32497823 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005167194.4 → XP_005167251.1  uncharacterized protein si:dkey-164f24.2 isoform X2

    UniProtKB/TrEMBL
    A0A8M2BEI7, E7F7M1
    Related
    ENSDARP00000110777.1, ENSDART00000122359.3
    Conserved Domains (1) summary
    PRK10811
    Location:134 → 303
    rne; ribonuclease E; Reviewed

  2. XM_005167193.4 → XP_005167250.1  uncharacterized protein si:dkey-164f24.2 isoform X1

    UniProtKB/TrEMBL
    A0A286Y8V3
    Related
    ENSDARP00000143587.1, ENSDART00000176298.2
    Conserved Domains (1) summary
    PRK10811
    Location:172 → 359
    rne; ribonuclease E; Reviewed

  3. XM_009304073.3 → XP_009302348.1  uncharacterized protein si:dkey-164f24.2 isoform X4

    UniProtKB/TrEMBL
    A0A0R4IKX9, A0A8M3AV94
    Related
    ENSDARP00000134478.1, ENSDART00000168929.2
    Conserved Domains (1) summary
    PRK10811
    Location:71 → 219
    rne; ribonuclease E; Reviewed

  4. XM_009304072.3 → XP_009302347.1  uncharacterized protein si:dkey-164f24.2 isoform X3

    UniProtKB/TrEMBL
    A0A8M3BBV3
    Related
    ENSDARP00000134324.1, ENSDART00000163962.2
    Conserved Domains (1) summary
    PRK10811
    Location:71 → 258
    rne; ribonuclease E; Reviewed
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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