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tex30 testis expressed 30 [ Danio rerio (zebrafish) ]

Gene ID: 567483, updated on 12-Sep-2024

Summary

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Official Symbol
tex30provided by ZNC
Official Full Name
testis expressed 30provided by ZNC
Primary source
ZFIN:ZDB-GENE-041210-219
See related
Ensembl:ENSDARG00000030636 AllianceGenome:ZFIN:ZDB-GENE-041210-219
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
si:dkey-22a1.2; si:dkey-193n17.4
Summary
Predicted to enable hydrolase activity. Orthologous to human TEX30 (testis expressed 30). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
human mouse all
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Genomic context

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See tex30 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 9 NC_007120.7 (27393468..27396427, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 9 NC_007120.6 (27582722..27585690, complement)

Chromosome 9 - NC_007120.7Genomic Context describing neighboring genes Neighboring gene toll-like receptor 20, tandem duplicate 4 Neighboring gene nucleolus and neural progenitor protein Neighboring gene protein O-glucosyltransferase 2 Neighboring gene syntaxin binding protein 5L

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  2. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
testis-expressed sequence 30 protein; testis-expressed protein 30

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007120.7 Reference GRCz11 Primary Assembly

    Range
    27393468..27396427 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021478957.2 → XP_021334632.1  testis-expressed protein 30 isoform X2

    UniProtKB/TrEMBL
    A0A8M9PSW6, F1Q8A9
    Related
    ENSDARP00000092175.4, ENSDART00000101401.6
    Conserved Domains (1) summary
    cl21494
    Location:34 → 201
    Abhydrolase; alpha/beta hydrolases

  2. XM_021478956.2 → XP_021334631.1  testis-expressed protein 30 isoform X1

    UniProtKB/TrEMBL
    A0A8M9PZS8
    Related
    ENSDARP00000119504.1, ENSDART00000136412.2
    Conserved Domains (1) summary
    cl21494
    Location:34 → 212
    Abhydrolase; alpha/beta hydrolases

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394755.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    341485..344444 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_690780.9 → XP_695872.3  testis-expressed protein 30 isoform X2

    UniProtKB/TrEMBL
    A0A8M9PSW6, F1Q8A9
    Conserved Domains (1) summary
    cl21494
    Location:34 → 201
    Abhydrolase; alpha/beta hydrolases

  2. XM_021472191.2 → XP_021327866.1  testis-expressed protein 30 isoform X1

    UniProtKB/TrEMBL
    A0A8M9PZS8
    Conserved Domains (1) summary
    cl21494
    Location:34 → 212
    Abhydrolase; alpha/beta hydrolases

Reference GRCz11 ALT_DRER_TU_2

Genomic

  1. NW_018395282.1 Reference GRCz11 ALT_DRER_TU_2

    Range
    45404..48364 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_068219270.1 → XP_068075371.1  testis-expressed protein 30 isoform X2

  2. XM_068219272.1 → XP_068075373.1  testis-expressed protein 30 isoform X3

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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