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nrgna neurogranin (protein kinase C substrate, RC3) a [ Danio rerio (zebrafish) ]

Gene ID: 567608, updated on 28-Oct-2024

Summary

Official Symbol
nrgnaprovided by ZNC
Official Full Name
neurogranin (protein kinase C substrate, RC3) aprovided by ZNC
Primary source
ZFIN:ZDB-GENE-090710-4
See related
Ensembl:ENSDARG00000039626 AllianceGenome:ZFIN:ZDB-GENE-090710-4
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
nrgn; wu:fk30d11
Summary
Predicted to be located in membrane. Is expressed in forebrain and hindbrain. Orthologous to human NRGN (neurogranin). [provided by Alliance of Genome Resources, Oct 2024]
Orthologs
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Genomic context

See nrgna in Genome Data Viewer
Location:
chromosome: 5
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 5 NC_007116.7 (58372164..58382661)
105 previous assembly GRCz10 (GCF_000002035.5) 5 NC_007116.6 (57702156..57712653)

Chromosome 5 - NC_007116.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC137495642 Neighboring gene uncharacterized LOC137495643 Neighboring gene hepatic and glial cell adhesion molecule b Neighboring gene coiled-coil domain containing 15

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General protein information

Preferred Names
neurogranin (protein kinase C substrate, RC3) a

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001302620.1NP_001289549.1  neurogranin (protein kinase C substrate, RC3) a

    Status: VALIDATED

    Source sequence(s)
    EH437598, EH450061, EH462721, FJ392628
    UniProtKB/TrEMBL
    A0A8M1P133, F6NQC4
    Related
    ENSDARP00000057909.3, ENSDART00000057910.5
    Conserved Domains (1) summary
    smart00015
    Location:2747
    IQ; Calmodulin-binding motif

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007116.7 Reference GRCz11 Primary Assembly

    Range
    58372164..58382661
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)