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LOC567883 NOD-like receptor C [ Danio rerio (zebrafish) ]

Gene ID: 567883, updated on 12-Sep-2024

Summary

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Gene symbol
LOC567883
Gene description
NOD-like receptor C
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Orthologs
all
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Genomic context

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See LOC567883 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
16
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) Unplaced Scaffold NW_003336534.1 (31412..87445)
105 previous assembly GRCz10 (GCF_000002035.5) Unplaced Scaffold NW_003336534.1 (56256..87448)

NW_003336534.1Genomic Context describing neighboring genes Neighboring gene lysine demethylase 5A Neighboring gene ubiquitin specific peptidase 15 Neighboring gene ribonuclease inhibitor-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. A genomic view of the NOD-like receptor family in teleost fish: identification of a novel NLR subfamily in zebrafish. Laing KJ, et al. BMC Evol Biol, 2008 Feb 6. PMID 18254971, Free PMC Article
  2. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

General protein information

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Preferred Names
NACHT, LRR and PYD domains-containing protein 12; NACHT, LRR and PYD domains-containing protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NW_003336534.1 Reference GRCz11 Primary Assembly

    Range
    31412..87445
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_068217773.1 → XP_068073874.1  NACHT, LRR and PYD domains-containing protein 3 isoform X1

  2. XM_068217772.1 → XP_068073873.1  NACHT, LRR and PYD domains-containing protein 3 isoform X1

  3. XM_017354459.2 → XP_017209948.2  NACHT, LRR and PYD domains-containing protein 12 isoform X2

  4. XM_068217775.1 → XP_068073876.1  NACHT, LRR and PYD domains-containing protein 3 isoform X3

  5. XM_068217774.1 → XP_068073875.1  NACHT, LRR and PYD domains-containing protein 3 isoform X1

  6. XM_068217776.1 → XP_068073877.1  NACHT, LRR and PYD domains-containing protein 3 isoform X3

Nucleotide Protein Strain
Heading Accession and Version

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