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rbm25a RNA binding motif protein 25a [ Danio rerio (zebrafish) ]

Gene ID: 568088, updated on 27-Mar-2024

Summary

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Official Symbol
rbm25aprovided by ZNC
Official Full Name
RNA binding motif protein 25aprovided by ZNC
Primary source
ZFIN:ZDB-GENE-090312-142
See related
AllianceGenome:ZFIN:ZDB-GENE-090312-142
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
si:ch211-12d10.5
Summary
Predicted to enable mRNA binding activity. Predicted to be involved in regulation of alternative mRNA splicing, via spliceosome. Predicted to act upstream of or within mRNA processing. Orthologous to human RBM25 (RNA binding motif protein 25). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
all
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Genomic context

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See rbm25a in Genome Data Viewer
Location:
chromosome: 13
Exon count:
18
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 13 NC_007124.7 (32997014..33022394, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 13 NC_007124.6 (32866564..32891932, complement)

Chromosome 13 - NC_007124.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC103912024 Neighboring gene potassium voltage-gated channel, subfamily F, member 1b Neighboring gene arginase 2 Neighboring gene vesicle transport through interaction with t-SNAREs 1B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Transcriptomic analyses reveal novel genes with sexually dimorphic expression in the zebrafish gonad and brain. Sreenivasan R, et al. PLoS One, 2008 Mar 12. PMID 18335061, Free PMC Article
  2. Contrasted innate responses to two viruses in zebrafish: insights into the ancestral repertoire of vertebrate IFN-stimulated genes. Briolat V, et al. J Immunol, 2014 May 1. PMID 24683187
  3. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables mRNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in regulation of alternative mRNA splicing, via spliceosome IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
RNA-binding protein 25
Names
RNA binding motif protein 25-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007124.7 Reference GRCz11 Primary Assembly

    Range
    32997014..33022394 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005156958.4 → XP_005157015.1  RNA-binding protein 25 isoform X1

    UniProtKB/TrEMBL
    A0A8M2B3B1
    Conserved Domains (3) summary
    smart00311
    Location:725 → 798
    PWI; PWI, domain in splicing factors
    COG5281
    Location:383 → 528
    COG5281; Phage-related minor tail protein [Mobilome: prophages, transposons]
    cd12446
    Location:87 → 167
    RRM_RBM25; RNA recognition motif in eukaryotic RNA-binding protein 25 and similar proteins

  2. XM_009307431.1 → XP_009305706.1  RNA-binding protein 25 isoform X2

    UniProtKB/TrEMBL
    A0A8M3AZ94
    Conserved Domains (2) summary
    smart00311
    Location:526 → 599
    PWI; PWI, domain in splicing factors
    COG5281
    Location:184 → 329
    COG5281; Phage-related minor tail protein [Mobilome: prophages, transposons]
Nucleotide Protein Strain
Heading Accession and Version

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