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znf384b zinc finger protein 384 b [ Danio rerio (zebrafish) ]

Gene ID: 568558, updated on 12-Sep-2024

Summary

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Official Symbol
znf384bprovided by ZNC
Official Full Name
zinc finger protein 384 bprovided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-2855
See related
Ensembl:ENSDARG00000089032 AllianceGenome:ZFIN:ZDB-GENE-030131-2855
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fc19g06; wu:fc19g06; zgc:158259; si:ch211-154o6.2
Summary
Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
all
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Genomic context

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See znf384b in Genome Data Viewer
Location:
chromosome: 16
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 16 NC_007127.7 (21672964..21695739, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 16 NC_007127.6 (21868712..21891890, complement)

Chromosome 16 - NC_007127.7Genomic Context describing neighboring genes Neighboring gene discoidin domain receptor tyrosine kinase 1 Neighboring gene guanine nucleotide binding protein-like 1 Neighboring gene si:ch211-154o6.3 Neighboring gene si:ch211-154o6.4 Neighboring gene COP9 constitutive photomorphogenic homolog subunit 7A

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Studies Into β-Glucan Recognition in Fish Suggests a Key Role for the C-Type Lectin Pathway. Petit J, et al. Front Immunol, 2019. PMID 30863400, Free PMC Article
  2. Toxicogenomic and phenotypic analyses of bisphenol-A early-life exposure toxicity in zebrafish. Lam SH, et al. PLoS One, 2011. PMID 22194820, Free PMC Article
  3. Comprehensive expression map of transcription regulators in the adult zebrafish telencephalon reveals distinct neurogenic niches. Diotel N, et al. J Comp Neurol, 2015 Jun 1. PMID 25556858, Free PMC Article
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IBA
Inferred from Biological aspect of Ancestor
more info
  
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
zinc finger protein 384b
Names
nuclear matrix transcription factor 4-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001045163.1 → NP_001038628.1  zinc finger protein 384b

    Status: PROVISIONAL

    Source sequence(s)
    BX294670
    UniProtKB/TrEMBL
    A0A2R8QFY9, A1L1R2, Q1LXQ0
    Related
    ENSDARP00000109830.1, ENSDART00000123597.3
    Conserved Domains (3) summary
    sd00017
    Location:205 → 225
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:203 → 225
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:217 → 242
    zf-H2C2_2; Zinc-finger double domain

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007127.7 Reference GRCz11 Primary Assembly

    Range
    21672964..21695739 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009292250.4 → XP_009290525.1  zinc finger protein 384b isoform X2

    UniProtKB/TrEMBL
    A0A8M3AQI4
    Conserved Domains (3) summary
    COG5048
    Location:222 → 371
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:252 → 272
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:264 → 289
    zf-H2C2_2; Zinc-finger double domain

  2. XM_009292251.4 → XP_009290526.1  zinc finger protein 384b isoform X4

    UniProtKB/TrEMBL
    A0A8M3AI04
    Conserved Domains (3) summary
    sd00017
    Location:217 → 237
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:215 → 237
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:229 → 254
    zf-H2C2_2; Zinc-finger double domain

  3. XM_068213997.1 → XP_068070098.1  zinc finger protein 384b isoform X3

  4. XM_009292249.4 → XP_009290524.1  zinc finger protein 384b isoform X1

    UniProtKB/TrEMBL
    A0A8M3ATC2
    Conserved Domains (3) summary
    COG5048
    Location:234 → 383
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:264 → 284
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:276 → 301
    zf-H2C2_2; Zinc-finger double domain

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394960.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    53832..76759 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

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