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si:ch211-266i6.3 si:ch211-266i6.3 [ Danio rerio (zebrafish) ]

Gene ID: 568826, updated on 28-Oct-2024

Summary

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Official Symbol
si:ch211-266i6.3provided by ZNC
Official Full Name
si:ch211-266i6.3provided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-5420
See related
Ensembl:ENSDARG00000086112 AllianceGenome:ZFIN:ZDB-GENE-030131-5420
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fd16g01; wu:fd16g01; wu:fi42a10
Summary
Predicted to be involved in negative regulation of microtubule depolymerization. Predicted to be located in cytoplasm. Predicted to be active in microtubule cytoskeleton. Orthologous to human CKAP2 (cytoskeleton associated protein 2). [provided by Alliance of Genome Resources, Oct 2024]
Orthologs
all
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Genomic context

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See si:ch211-266i6.3 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 10 NC_007121.7 (32050936..32058292)
105 previous assembly GRCz10 (GCF_000002035.5) 10 NC_007121.6 (32107046..32114436)

Chromosome 10 - NC_007121.7Genomic Context describing neighboring genes Neighboring gene forkhead box O1 b Neighboring gene LHFPL tetraspan subfamily member 6 Neighboring gene si:dkey-250d21.1 Neighboring gene THAP domain containing 12a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Process Evidence Code Pubs
involved_in negative regulation of microtubule depolymerization IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
is_active_in microtubule cytoskeleton IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
cytoskeleton-associated protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007121.7 Reference GRCz11 Primary Assembly

    Range
    32050936..32058292
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_692182.8 → XP_697274.2  cytoskeleton-associated protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A8N7T866, E7F392
    Related
    ENSDARP00000117930.1, ENSDART00000137373.2
    Conserved Domains (1) summary
    pfam15297
    Location:259 → 594
    CKAP2_C; Cytoskeleton-associated protein 2 C-terminus

  2. XM_021479399.2 → XP_021335074.1  cytoskeleton-associated protein 2 isoform X2

    UniProtKB/TrEMBL
    A0A8M9QCL0
    Conserved Domains (1) summary
    pfam15297
    Location:256 → 591
    CKAP2_C; Cytoskeleton-associated protein 2 C-terminus
Nucleotide Protein Strain
Heading Accession and Version

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