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sycn.2 syncollin, tandem duplicate 2 [ Danio rerio (zebrafish) ]

Gene ID: 568900, updated on 12-Sep-2024

Summary

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Official Symbol
sycn.2provided by ZNC
Official Full Name
syncollin, tandem duplicate 2provided by ZNC
Primary source
ZFIN:ZDB-GENE-141212-321
See related
Ensembl:ENSDARG00000103687 AllianceGenome:ZFIN:ZDB-GENE-141212-321
Gene type
ncRNA
RefSeq status
PREDICTED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
znf1006; si:dkey-183i3.8
Summary
Predicted to act upstream of or within exocytosis. Predicted to be located in secretory granule membrane. Orthologous to human SYCN (syncollin). [provided by Alliance of Genome Resources, Apr 2022]
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Genomic context

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See sycn.2 in Genome Data Viewer
Location:
chromosome: 21
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 21 NC_007132.7 (25226558..25227191)
105 previous assembly GRCz10 (GCF_000002035.5) 21 NC_007132.6 (25189953..25190586)

Chromosome 21 - NC_007132.7Genomic Context describing neighboring genes Neighboring gene syncollin-like Neighboring gene syncollin Neighboring gene guanine nucleotide binding protein (G protein), gamma 8 Neighboring gene transmembrane protein 45B Neighboring gene nuclear factor related to kappaB binding protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Immunoglobulin superfamily receptor Junctional adhesion molecule 3 (Jam3) requirement for melanophore survival and patterning during formation of zebrafish stripes. Eom DS, et al. Dev Biol, 2021 Aug. PMID 33933422, Free PMC Article
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Other Names

  • zinc finger protein 1006

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_015620.1 RNA Sequence

    Status: PREDICTED

    Source sequence(s)
    BC083442
    Related
    ENSDART00000168480.2

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007132.7 Reference GRCz11 Primary Assembly

    Range
    25226558..25227191
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials