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zgc:113423 zgc:113423 [ Danio rerio (zebrafish) ]

Gene ID: 569178, updated on 28-Oct-2024

Summary

Official Symbol
zgc:113423provided by ZNC
Official Full Name
zgc:113423provided by ZNC
Primary source
ZFIN:ZDB-GENE-050913-14
See related
Ensembl:ENSDARG00000058978 AllianceGenome:ZFIN:ZDB-GENE-050913-14
Gene type
protein coding
RefSeq status
PREDICTED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary
Predicted to enable DNA binding activity. Orthologous to human BEND2 (BEN domain containing 2). [provided by Alliance of Genome Resources, Oct 2024]
Orthologs
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Genomic context

See zgc:113423 in Genome Data Viewer
Location:
chromosome: 23
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 23 NC_007134.7 (1042635..1056734, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 23 NC_007134.6 (1033504..1047614, complement)

Chromosome 23 - NC_007134.7Genomic Context describing neighboring genes Neighboring gene cadherin 26, tandem duplicate 2 Neighboring gene cadherin 26, tandem duplicate 1 Neighboring gene si:zfos-905g2.1 Neighboring gene protein FAM13A-like Neighboring gene solute carrier family 34 member 2b Neighboring gene uncharacterized LOC137489066

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General gene information

Markers

Clone Names

  • MGC113423

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 
enables molecular_function ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

General protein information

Preferred Names
uncharacterized protein LOC569178

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001030233.1NP_001025404.1  uncharacterized protein LOC569178

    See identical proteins and their annotated locations for NP_001025404.1

    Status: PREDICTED

    Source sequence(s)
    BC096931
    UniProtKB/TrEMBL
    Q4V9E7
    Related
    ENSDARP00000076399.5, ENSDART00000081961.7
    Conserved Domains (1) summary
    smart01025
    Location:435513
    BEN; The BEN domain is found in diverse animal proteins

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007134.7 Reference GRCz11 Primary Assembly

    Range
    1042635..1056734 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)