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fam161b FAM161 centrosomal protein B [ Danio rerio (zebrafish) ]

Gene ID: 569419, updated on 14-Nov-2024

Summary

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Official Symbol
fam161bprovided by ZNC
Official Full Name
FAM161 centrosomal protein Bprovided by ZNC
Primary source
ZFIN:ZDB-GENE-120928-1
See related
Ensembl:ENSDARG00000089467 AllianceGenome:ZFIN:ZDB-GENE-120928-1
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary
Predicted to be involved in cilium organization. Predicted to be located in cytoskeleton. Predicted to colocalize with cilium. Orthologous to human FAM161B (FAM161 centrosomal protein B). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
human mouse all
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Genomic context

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See fam161b in Genome Data Viewer
Location:
chromosome: 17
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 17 NC_007128.7 (44980916..45009685, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 17 NC_007128.6 (44867225..44896034, complement)

Chromosome 17 - NC_007128.7Genomic Context describing neighboring genes Neighboring gene transmembrane protein 63C Neighboring gene uncharacterized LOC137488140 Neighboring gene uncharacterized LOC137488141 Neighboring gene neuroglobin Neighboring gene coenzyme Q6 monooxygenase Neighboring gene ectonucleoside triphosphate diphosphohydrolase 5a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by ZFIN

Component Evidence Code Pubs
located_in cytoskeleton IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
protein FAM161B
Names
FAM161B, centrosomal protein
family with sequence similarity 161, member B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007128.7 Reference GRCz11 Primary Assembly

    Range
    44980916..45009685 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_692802.8 → XP_697894.3  protein FAM161B isoform X1

    UniProtKB/TrEMBL
    A0A8N7T6U5
    Related
    ENSDARP00000111624.2, ENSDART00000123971.4
    Conserved Domains (1) summary
    pfam10595
    Location:144 → 476
    UPF0564; uncharacterized protein family UPF0564

  2. XM_021467472.2 → XP_021323147.1  protein FAM161B isoform X2

    UniProtKB/TrEMBL
    A0A8M9P0Q6
    Conserved Domains (1) summary
    pfam10595
    Location:144 → 476
    UPF0564; Uncharacterized protein family UPF0564
Nucleotide Protein Strain
Heading Accession and Version

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