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si:rp71-77l1.1 si:rp71-77l1.1 [ Danio rerio (zebrafish) ]

Gene ID: 569583, updated on 2-Nov-2024

Summary

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Official Symbol
si:rp71-77l1.1provided by ZNC
Official Full Name
si:rp71-77l1.1provided by ZNC
Primary source
ZFIN:ZDB-GENE-131121-141
See related
Ensembl:ENSDARG00000097746 AllianceGenome:ZFIN:ZDB-GENE-131121-141
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary
Predicted to be active in membrane. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See si:rp71-77l1.1 in Genome Data Viewer
Location:
chromosome: 16
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 16 NC_007127.7 (45087970..45094600, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 16 NC_007127.6 (45121254..45131448, complement)

Chromosome 16 - NC_007127.7Genomic Context describing neighboring genes Neighboring gene glyceraldehyde-3-phosphate dehydrogenase, spermatogenic Neighboring gene si:rp71-77l1.2 Neighboring gene uncharacterized LOC137487974 Neighboring gene uncharacterized LOC100149761 Neighboring gene si:ch73-343g19.4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  2. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by ZFIN

Component Evidence Code Pubs
is_active_in membrane IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
dispanin subfamily A member 2b

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007127.7 Reference GRCz11 Primary Assembly

    Range
    45087970..45094600 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009292631.4 → XP_009290906.1  dispanin subfamily A member 2b

    UniProtKB/TrEMBL
    A0A8M3B1Z7, X1WG92
    Related
    ENSDARP00000129247.1, ENSDART00000155479.2
    Conserved Domains (1) summary
    pfam04505
    Location:62 → 127
    CD225; Interferon-induced transmembrane protein
Nucleotide Protein
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Gene LinkOut

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Molecular Biology Databases
Research Materials