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si:dkey-66i24.7 si:dkey-66i24.7 [ Danio rerio (zebrafish) ]

Gene ID: 569935, updated on 12-Sep-2024

Summary

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Official Symbol
si:dkey-66i24.7provided by ZNC
Official Full Name
si:dkey-66i24.7provided by ZNC
Primary source
ZFIN:ZDB-GENE-130603-106
See related
Ensembl:ENSDARG00000096714 AllianceGenome:ZFIN:ZDB-GENE-130603-106
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Orthologs
all
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Genomic context

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See si:dkey-66i24.7 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 3 NC_007114.7 (31058457..31060607)
105 previous assembly GRCz10 (GCF_000002035.5) 3 NC_007114.6 (30927536..30929609)

Chromosome 3 - NC_007114.7Genomic Context describing neighboring genes Neighboring gene cytochrome c oxidase subunit 6A2 Neighboring gene armadillo repeat containing 5 Neighboring gene uncharacterized LOC569097 Neighboring gene elongin B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

General protein information

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Preferred Names
uncharacterized protein si:dkey-66i24.7

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007114.7 Reference GRCz11 Primary Assembly

    Range
    31058457..31060607
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021474111.2 → XP_021329786.1  uncharacterized protein si:dkey-66i24.7

    UniProtKB/TrEMBL
    A0A8M9Q4J4, U3JAU9
    Related
    ENSDARP00000127368.1, ENSDART00000153381.2
    Conserved Domains (1) summary
    cl23759
    Location:35 → 124
    GT1; GT1, myb-like, SANT family

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394534.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    131345..133506
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_693350.10 → XP_698442.1  uncharacterized protein si:dkey-66i24.7

    UniProtKB/TrEMBL
    A0A8M9Q4J4, U3JAU9
    Conserved Domains (1) summary
    cl23759
    Location:35 → 124
    GT1; GT1, myb-like, SANT family
Nucleotide Protein
Heading Accession and Version

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