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trappc8 trafficking protein particle complex subunit 8 [ Danio rerio (zebrafish) ]

Gene ID: 570167, updated on 17-Aug-2024

Summary

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Official Symbol
trappc8provided by ZNC
Official Full Name
trafficking protein particle complex subunit 8provided by ZNC
Primary source
ZFIN:ZDB-GENE-130530-601
See related
Ensembl:ENSDARG00000038866 AllianceGenome:ZFIN:ZDB-GENE-130530-601
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary
Orthologous to human TRAPPC8 (trafficking protein particle complex subunit 8). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 20
Exon count:
31
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 20 NC_007131.7 (6307622..6476973, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 20 NC_007131.6 (6263777..6487025, complement)

Chromosome 20 - NC_007131.7Genomic Context describing neighboring genes Neighboring gene finTRIM family, member 63 Neighboring gene opsin 7, group member a Neighboring gene RING finger protein 166 Neighboring gene meprin A subunit beta a Neighboring gene MCM3 minichromosome maintenance deficient 3 (S. cerevisiae), like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Evolution of complexity in the zebrafish synapse proteome. Bayés À, et al. Nat Commun, 2017 Mar 2. PMID 28252024, Free PMC Article
  2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

General protein information

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Preferred Names
trafficking protein particle complex subunit 8
Names
trafficking protein particle complex 8
zmp:0000000598

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007131.7 Reference GRCz11 Primary Assembly

    Range
    6307622..6476973 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017352638.2 → XP_017208127.1  trafficking protein particle complex subunit 8 isoform X3

    UniProtKB/TrEMBL
    A0A8M6YUB1

  2. XM_017352637.2 → XP_017208126.1  trafficking protein particle complex subunit 8 isoform X2

    UniProtKB/TrEMBL
    A0A8M6Z3E9

  3. XM_017352636.2 → XP_017208125.1  trafficking protein particle complex subunit 8 isoform X1

    UniProtKB/TrEMBL
    A0A8M6YWS5, E7FA12
    Related
    ENSDARP00000071563.4, ENSDART00000077095.6

  4. XM_017352639.2 → XP_017208128.1  trafficking protein particle complex subunit 8 isoform X4

    UniProtKB/TrEMBL
    A0A8M6Z2T8
Nucleotide Protein Strain
Heading Accession and Version

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