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si:ch211-140m22.7 si:ch211-140m22.7 [ Danio rerio (zebrafish) ]

Gene ID: 570370, updated on 25-Apr-2024

Summary

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Official Symbol
si:ch211-140m22.7provided by ZNC
Official Full Name
si:ch211-140m22.7provided by ZNC
Primary source
ZFIN:ZDB-GENE-070912-73
See related
Ensembl:ENSDARG00000077967 AllianceGenome:ZFIN:ZDB-GENE-070912-73
Gene type
protein coding
RefSeq status
PREDICTED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary
Predicted to enable proton transmembrane transporter activity. Predicted to act upstream of or within ATP synthesis coupled proton transport. Predicted to be located in mitochondrial inner membrane. Predicted to be part of mitochondrial proton-transporting ATP synthase complex. [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
all
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Genomic context

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See si:ch211-140m22.7 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
9
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 9 NC_007120.7 (19489514..19510934)
105 previous assembly GRCz10 (GCF_000002035.5) 9 NC_007120.6 (19678645..19700065)

Chromosome 9 - NC_007120.7Genomic Context describing neighboring genes Neighboring gene solute carrier family 37 member 1 Neighboring gene phosphodiesterase 9aa Neighboring gene WD repeat domain 4 Neighboring gene NADH:ubiquinone oxidoreductase subunit V3 Neighboring gene pbx/knotted 1 homeobox 1.1 Neighboring gene transmembrane serine protease 3a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Hematopoietic gene expression profile in zebrafish kidney marrow. Song HD, et al. Proc Natl Acad Sci U S A, 2004 Nov 16. PMID 15520368, Free PMC Article
  2. Evolution of complexity in the zebrafish synapse proteome. Bayés À, et al. Nat Commun, 2017 Mar 2. PMID 28252024, Free PMC Article
  3. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  5. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables proton transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within proton motive force-driven ATP synthesis IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of mitochondrial proton-transporting ATP synthase complex IBA
Inferred from Biological aspect of Ancestor
more info
  
part_of mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
ATP synthase coupling factor 6, mitochondrial-like; uncharacterized protein LOC570370

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001256697.2 → NP_001243626.1  uncharacterized protein LOC570370 isoform 2

    See identical proteins and their annotated locations for NP_001243626.1

    Status: PREDICTED

    Description
    Transcript Variant: This variant (2) lacks an alternate in-frame exon compared to variant 1. The resulting isoform (2) has the same N- and C-termini but is shorter compared to isoform 1.
    Source sequence(s)
    BX294175, FP017279
    UniProtKB/TrEMBL
    A0A8M1P4K7, E7F2K4
    Related
    ENSDARP00000104105.3, ENSDART00000114256.4
    Conserved Domains (1) summary
    pfam05511
    Location:52 → 112
    ATP-synt_F6; Mitochondrial ATP synthase coupling factor 6

  2. NM_001328145.1 → NP_001315074.1  uncharacterized protein LOC570370 isoform 1

    Status: PREDICTED

    Description
    Transcript Variant: This variant (1) represents the longest transcript and encodes the longer isoform (1).
    Source sequence(s)
    BX294175, FP017279
    UniProtKB/TrEMBL
    A0A2R8RW11, A0A8M1P3K6
    Related
    ENSDARP00000154204.1, ENSDART00000190572.1
    Conserved Domains (1) summary
    pfam05511
    Location:392 → 452
    ATP-synt_F6; Mitochondrial ATP synthase coupling factor 6

RNA

  1. NR_137292.1 RNA Sequence

    Status: PREDICTED

    Description
    Transcript Variant: This variant (3) lacks two alternate exons compared to variant 1. This variant is represented as non-coding because the predicted protein does not meet RefSeq quality criteria.
    Source sequence(s)
    BX294175, FP017279
    Related
    ENSDART00000151918.3

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007120.7 Reference GRCz11 Primary Assembly

    Range
    19489514..19510934
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009304638.3 → XP_009302913.1  ATP synthase coupling factor 6, mitochondrial-like isoform X1

    UniProtKB/TrEMBL
    A0A8M3B5K9
    Conserved Domains (1) summary
    pfam05511
    Location:414 → 474
    ATP-synt_F6; Mitochondrial ATP synthase coupling factor 6

  2. XM_009304641.3 → XP_009302916.1  ATP synthase coupling factor 6, mitochondrial-like isoform X7

    UniProtKB/TrEMBL
    A0A8M3AVZ6
    Conserved Domains (1) summary
    pfam05511
    Location:378 → 438
    ATP-synt_F6; Mitochondrial ATP synthase coupling factor 6

  3. XM_009304639.3 → XP_009302914.1  ATP synthase coupling factor 6, mitochondrial-like isoform X4

    UniProtKB/TrEMBL
    A0A8M3B2M1
    Conserved Domains (1) summary
    pfam05511
    Location:394 → 454
    ATP-synt_F6; Mitochondrial ATP synthase coupling factor 6

  4. XM_021478752.1 → XP_021334427.1  ATP synthase coupling factor 6, mitochondrial-like isoform X2

    UniProtKB/TrEMBL
    A0A8M9PSB8
    Conserved Domains (2) summary
    pfam05511
    Location:401 → 461
    ATP-synt_F6; Mitochondrial ATP synthase coupling factor 6
    cl26557
    Location:245 → 433
    RNase_E_G; Ribonuclease E/G family

  5. XM_021478755.1 → XP_021334430.1  ATP synthase coupling factor 6, mitochondrial-like isoform X6

    UniProtKB/TrEMBL
    A0A8M9QJT6
    Conserved Domains (2) summary
    pfam05511
    Location:381 → 441
    ATP-synt_F6; Mitochondrial ATP synthase coupling factor 6
    cl26557
    Location:224 → 413
    RNase_E_G; Ribonuclease E/G family

  6. XM_021478753.1 → XP_021334428.1  ATP synthase coupling factor 6, mitochondrial-like isoform X3

    UniProtKB/TrEMBL
    A0A8M9Q4P8
    Conserved Domains (2) summary
    pfam05511
    Location:395 → 455
    ATP-synt_F6; Mitochondrial ATP synthase coupling factor 6
    cl26557
    Location:239 → 427
    RNase_E_G; Ribonuclease E/G family

  7. XM_009304642.3 → XP_009302917.1  ATP synthase coupling factor 6, mitochondrial-like isoform X8

    UniProtKB/TrEMBL
    A0A8M3BCF4
    Conserved Domains (1) summary
    pfam05511
    Location:338 → 398
    ATP-synt_F6; Mitochondrial ATP synthase coupling factor 6

  8. XM_021478754.1 → XP_021334429.1  ATP synthase coupling factor 6, mitochondrial-like isoform X5

    UniProtKB/TrEMBL
    A0A8M9QAX5
    Conserved Domains (2) summary
    pfam05511
    Location:382 → 442
    ATP-synt_F6; Mitochondrial ATP synthase coupling factor 6
    cl26557
    Location:226 → 414
    RNase_E_G; Ribonuclease E/G family
Nucleotide Protein Strain
Heading Accession and Version

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