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si:dkey-100n23.3 si:dkey-100n23.3 [ Danio rerio (zebrafish) ]

Gene ID: 571373, updated on 28-Oct-2024

Summary

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Official Symbol
si:dkey-100n23.3provided by ZNC
Official Full Name
si:dkey-100n23.3provided by ZNC
Primary source
ZFIN:ZDB-GENE-070912-345
See related
Ensembl:ENSDARG00000062148 AllianceGenome:ZFIN:ZDB-GENE-070912-345
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary
Predicted to enable SUMO-specific endopeptidase activity. Predicted to be involved in protein desumoylation. Predicted to act upstream of or within proteolysis. Predicted to be active in cytoplasm and nucleus. Orthologous to human SENP7 (SUMO specific peptidase 7). [provided by Alliance of Genome Resources, Oct 2024]
Orthologs
all
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Genomic context

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See si:dkey-100n23.3 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
21
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 9 NC_007120.7 (30217819..30243374, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 9 NC_007120.6 (30407078..30432796, complement)

Chromosome 9 - NC_007120.7Genomic Context describing neighboring genes Neighboring gene toll-like receptor 20f Neighboring gene toll-like receptor 13 Neighboring gene si:dkey-100n23.4 Neighboring gene si:dkey-100n23.5

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Hematopoietic gene expression profile in zebrafish kidney marrow. Song HD, et al. Proc Natl Acad Sci U S A, 2004 Nov 16. PMID 15520368, Free PMC Article
  2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables SUMO-specific endopeptidase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables cysteine-type peptidase activity IEA
Inferred from Electronic Annotation
more info
  
enables hydrolase activity IEA
Inferred from Electronic Annotation
more info
  
enables peptidase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in protein desumoylation IBA
Inferred from Biological aspect of Ancestor
more info
  
acts_upstream_of_or_within proteolysis IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
sentrin-specific protease 7

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007120.7 Reference GRCz11 Primary Assembly

    Range
    30217819..30243374 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_068223648.1 → XP_068079749.1  sentrin-specific protease 7 isoform X2

  2. XM_005167770.5 → XP_005167827.1  sentrin-specific protease 7 isoform X1

    See identical proteins and their annotated locations for XP_005167827.1

    UniProtKB/TrEMBL
    A0A8M9QBG7, F1Q9H5
    Related
    ENSDARP00000083972.5, ENSDART00000089539.7
    Conserved Domains (1) summary
    COG5160
    Location:678 → 939
    ULP1; Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones]

  3. XM_005167771.5 → XP_005167828.1  sentrin-specific protease 7 isoform X1

    See identical proteins and their annotated locations for XP_005167828.1

    UniProtKB/TrEMBL
    A0A8M9QBG7, F1Q9H5
    Conserved Domains (1) summary
    COG5160
    Location:678 → 939
    ULP1; Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones]

  4. XM_021478984.2 → XP_021334659.1  sentrin-specific protease 7 isoform X1

    UniProtKB/TrEMBL
    A0A8M9QBG7, F1Q9H5
    Conserved Domains (1) summary
    COG5160
    Location:678 → 939
    ULP1; Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones]
Nucleotide Protein Strain
Heading Accession and Version

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