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nrbf2a nuclear receptor binding factor 2a [ Danio rerio (zebrafish) ]

Gene ID: 571581, updated on 28-Oct-2024

Summary

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Official Symbol
nrbf2aprovided by ZNC
Official Full Name
nuclear receptor binding factor 2aprovided by ZNC
Primary source
ZFIN:ZDB-GENE-131009-1
See related
AllianceGenome:ZFIN:ZDB-GENE-131009-1
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary
Predicted to act upstream of or within autophagy. Orthologous to human NRBF2 (nuclear receptor binding factor 2). [provided by Alliance of Genome Resources, Oct 2024]
Orthologs
all
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Genomic context

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See nrbf2a in Genome Data Viewer
Location:
chromosome: 17
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 17 NC_007128.7 (43691414..43697556)
105 previous assembly GRCz10 (GCF_000002035.5) 17 NC_007128.6 (13006667..13012731, complement)

Chromosome 17 - NC_007128.7Genomic Context describing neighboring genes Neighboring gene 2-aminoethanethiol (cysteamine) dioxygenase b Neighboring gene early growth response 2a Neighboring gene jumonji domain containing 1Ca Neighboring gene uncharacterized LOC137488137 Neighboring gene dr1-associated corepressor Neighboring gene AHA1, activator of heat shock protein ATPase homolog 1b

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by ZFIN

Process Evidence Code Pubs
acts_upstream_of_or_within autophagy IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
nuclear receptor binding factor 2a

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001386790.1 → NP_001373719.1  nuclear receptor binding factor 2a

    Status: VALIDATED

    Source sequence(s)
    FO704797
    UniProtKB/TrEMBL
    A0A8N7TBX1
    Conserved Domains (2) summary
    pfam08961
    Location:108 → 170
    NRBF2; Nuclear receptor-binding factor 2, autophagy regulator
    pfam17169
    Location:28 → 96
    NRBF2_MIT; MIT domain of nuclear receptor-binding factor 2

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007128.7 Reference GRCz11 Primary Assembly

    Range
    43691414..43697556
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

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