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jmjd1ca jumonji domain containing 1Ca [ Danio rerio (zebrafish) ]

Gene ID: 571586, updated on 27-Mar-2024

Summary

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Official Symbol
jmjd1caprovided by ZNC
Official Full Name
jumonji domain containing 1Caprovided by ZNC
Primary source
ZFIN:ZDB-GENE-130530-832
See related
AllianceGenome:ZFIN:ZDB-GENE-130530-832
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary
Acts upstream of or within hematopoietic progenitor cell differentiation. Orthologous to human JMJD1C (jumonji domain containing 1C). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
all
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Genomic context

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See jmjd1ca in Genome Data Viewer
Location:
chromosome: 17
Exon count:
27
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 17 NC_007128.7 (43702681..43838821, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 17 NC_007128.6 (12943676..13001404)

Chromosome 17 - NC_007128.7Genomic Context describing neighboring genes Neighboring gene early growth response 2a Neighboring gene nuclear receptor binding factor 2a Neighboring gene dr1-associated corepressor-like Neighboring gene AHA1, activator of heat shock protein ATPase homolog 1b

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. The Kdm/Kmt gene families in the self-fertilizing mangrove rivulus fish, Kryptolebias marmoratus, suggest involvement of histone methylation machinery in development and reproduction. Fellous A, et al. Gene, 2019 Mar 1. PMID 30458291
  2. A network of epigenetic regulators guides developmental haematopoiesis in vivo. Huang HT, et al. Nat Cell Biol, 2013 Dec. PMID 24240475, Free PMC Article
  3. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables histone H3K9 demethylase activity IEA
Inferred from Electronic Annotation
more info
  
enables histone H3K9me/H3K9me2 demethylase activity IEA
Inferred from Electronic Annotation
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in demethylation IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within hematopoietic progenitor cell differentiation IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
part_of histone deacetylase complex IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
probable JmjC domain-containing histone demethylation protein 2C
Names
zmp:0000000829

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007128.7 Reference GRCz11 Primary Assembly

    Range
    43702681..43838821 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021467470.1 → XP_021323145.1  probable JmjC domain-containing histone demethylation protein 2C

    UniProtKB/TrEMBL
    A0A8M9PPN0
    Conserved Domains (2) summary
    cl21464
    Location:2431 → 2540
    cupin_like; Conserved domain found in cupin and related proteins
    cl26464
    Location:823 → 1254
    Atrophin-1; Atrophin-1 family
Nucleotide Protein Strain
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