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si:ch73-41e3.7 si:ch73-41e3.7 [ Danio rerio (zebrafish) ]

Gene ID: 572312, updated on 2-Nov-2024

Summary

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Official Symbol
si:ch73-41e3.7provided by ZNC
Official Full Name
si:ch73-41e3.7provided by ZNC
Primary source
ZFIN:ZDB-GENE-090313-163
See related
Ensembl:ENSDARG00000089799 AllianceGenome:ZFIN:ZDB-GENE-090313-163
Gene type
protein coding
RefSeq status
PREDICTED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary
Predicted to contribute to siRNA binding activity. Predicted to be involved in regulatory ncRNA-mediated heterochromatin formation. Predicted to be active in nucleus. Orthologous to human ARB2BP (ARB2 family member B, pseudogene). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
all
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Genomic context

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See si:ch73-41e3.7 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 1 NC_007112.7 (518853..524433, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 1 NC_007112.6 (523674..529254, complement)

Chromosome 1 - NC_007112.7Genomic Context describing neighboring genes Neighboring gene basic leucine zipper nuclear factor 1 Neighboring gene tRNA methyltransferase 10C, mitochondrial RNase P subunit Neighboring gene thioredoxin-like 4B Neighboring gene mitochondrial ribosomal protein L16 Neighboring gene centromere protein Q

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  2. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
contributes_to siRNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in regulatory ncRNA-mediated heterochromatin formation IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
uncharacterized protein LOC572312
Names
protein FAM172A-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001145612.1 → NP_001139084.1  uncharacterized protein LOC572312

    Status: PREDICTED

    Source sequence(s)
    CU571081
    UniProtKB/TrEMBL
    A0A8M6Z6D8, B8JM37
    Related
    ENSDARP00000114039.1, ENSDART00000147610.2
    Conserved Domains (1) summary
    pfam09757
    Location:55 → 140
    Arb2; Arb2 domain

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007112.7 Reference GRCz11 Primary Assembly

    Range
    518853..524433 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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