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acot17 acyl-CoA thioesterase 17 [ Danio rerio (zebrafish) ]

Gene ID: 572757, updated on 2-Nov-2024

Summary

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Official Symbol
acot17provided by ZNC
Official Full Name
acyl-CoA thioesterase 17provided by ZNC
Primary source
ZFIN:ZDB-GENE-040426-2381
See related
Ensembl:ENSDARG00000088524 AllianceGenome:ZFIN:ZDB-GENE-040426-2381
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:77651; wu:fc48e10
Summary
Predicted to enable fatty acyl-CoA hydrolase activity. Predicted to be involved in acyl-CoA metabolic process and fatty acid metabolic process. Predicted to be located in membrane. Is expressed in liver and yolk syncytial layer. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See acot17 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 4 NC_007115.7 (25678113..25690533)
105 previous assembly GRCz10 (GCF_000002035.5) 4 NC_007115.6 (25688915..25701335)

Chromosome 4 - NC_007115.7Genomic Context describing neighboring genes Neighboring gene acyl-CoA thioesterase 14 Neighboring gene peroxisomal succinyl-coenzyme A thioesterase-like Neighboring gene acyl-CoA thioesterase 16 Neighboring gene acyl-CoA thioesterase 18 Neighboring gene laminin, beta 1b

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Enhanced transcription of complement and coagulation genes in the absence of adaptive immunity. Jima DD, et al. Mol Immunol, 2009 Apr. PMID 19200601, Free PMC Article
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Clone Names

  • MGC77651

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables fatty acyl-CoA hydrolase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables thiolester hydrolase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in acyl-CoA metabolic process IBA
Inferred from Biological aspect of Ancestor
more info
  
acts_upstream_of_or_within acyl-CoA metabolic process IEA
Inferred from Electronic Annotation
more info
  
involved_in fatty acid metabolic process IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
acyl-CoA thioesterase 17
Names
peroxisomal acyl-CoA thioesterase-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_213247.2 → NP_998412.2  acyl-CoA thioesterase 17

    Status: VALIDATED

    Source sequence(s)
    AI877534, BC152651, BX640593, CF348542, EB796040, EH590856
    UniProtKB/TrEMBL
    A0A8N1TRK1, A5PMN5, A7YYG3
    Related
    ENSDARP00000066942.5, ENSDART00000066943.7
    Conserved Domains (2) summary
    pfam04775
    Location:29 → 155
    Bile_Hydr_Trans; Acyl-CoA thioester hydrolase/BAAT N-terminal region
    pfam08840
    Location:219 → 431
    BAAT_C; BAAT / Acyl-CoA thioester hydrolase C terminal

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007115.7 Reference GRCz11 Primary Assembly

    Range
    25678113..25690533
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021475137.2 → XP_021330812.1  acyl-CoA thioesterase 17 isoform X1

    UniProtKB/TrEMBL
    A0A8M9PHJ7, A7YYG3, Q5RH34
    Related
    ENSDARP00000091510.4, ENSDART00000100737.5
    Conserved Domains (2) summary
    pfam04775
    Location:2 → 129
    Bile_Hydr_Trans; Acyl-CoA thioester hydrolase/BAAT N-terminal region
    pfam08840
    Location:193 → 405
    BAAT_C; BAAT / Acyl-CoA thioester hydrolase C terminal

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394556.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    164456..176868
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

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