trpc4apa transient receptor potential cation channel, subfamily C, member 4 associated protein a [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: trpc4apaprovided by ZNC
Official Full Name: transient receptor potential cation channel, subfamily C, member 4 associated protein aprovided by ZNC
Primary source: ZFIN:ZDB-GENE-000330-3
See related: Ensembl:ENSDARG00000018840 AllianceGenome:ZFIN:ZDB-GENE-000330-3
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: tap1a; wu:fb15d09; zgc:109818
Summary: Predicted to enable phosphatase binding activity. Predicted to be involved in ubiquitin-dependent protein catabolic process. Predicted to be part of Cul4A-RING E3 ubiquitin ligase complex. Orthologous to human TRPC4AP (transient receptor potential cation channel subfamily C member 4 associated protein). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs: all
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Genomic context

Location:: chromosome: 11

Exon count:: 19

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	11	NC_007122.7 (25157375..25180330)
105	previous assembly	GRCz10 (GCF_000002035.5)	11	NC_007122.6 (24919759..24942714)

Chromosome 11 - NC_007122.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

fb82h09.y1 (e-PCR)
- UniSTS:191699

fb15d09.x1 (e-PCR)
- UniSTS:190166

fb15d09.x1 (e-PCR)
- UniSTS:190167

Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables phosphatase binding	IBA Inferred from Biological aspect of Ancestor more info

Process	Evidence Code	Pubs
involved_in ubiquitin-dependent protein catabolic process	IBA Inferred from Biological aspect of Ancestor more info
acts_upstream_of_or_within ubiquitin-dependent protein catabolic process	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
part_of Cul4A-RING E3 ubiquitin ligase complex	IBA Inferred from Biological aspect of Ancestor more info
part_of Cul4A-RING E3 ubiquitin ligase complex	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: transient receptor potential cation channel, subfamily C, member 4 associated protein a

Names: trp4-associated protein 1a

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_131569.2 → NP_571644.1 transient receptor potential cation channel, subfamily C, member 4 associated protein a

See identical proteins and their annotated locations for NP_571644.1

Status: PROVISIONAL

Source sequence(s)

AF130459

UniProtKB/TrEMBL

Q9IAV5

Related

ENSDARP00000012730.8, ENSDART00000019450.10

Conserved Domains (1) summary

pfam12463
Location:383 → 691

DUF3689; Protein of unknown function (DUF3689)