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TBX1 T-box transcription factor 1 [ Canis lupus familiaris (dog) ]

Gene ID: 608214, updated on 5-Mar-2024

Summary

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Official Symbol
TBX1provided by VGNC
Official Full Name
T-box transcription factor 1provided by VGNC
Primary source
VGNC:VGNC:52972
See related
Ensembl:ENSCAFG00845029160
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 26
Exon count:
8
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 26 NC_051830.1 (30932031..30939925, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 26 NC_006608.4 (29486387..29494624, complement)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 26 NC_049247.1 (29690874..29698814, complement)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 26 NC_049286.1 (28979960..28987853, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 26 NC_049767.1 (28605398..28613298, complement)

Chromosome 26 - NC_051830.1Genomic Context describing neighboring genes Neighboring gene G protein subunit beta 1 like Neighboring gene uncharacterized LOC106557852 Neighboring gene uncharacterized LOC111092606 Neighboring gene septin 5 Neighboring gene claudin 5

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell fate specification IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
T-box transcription factor TBX1; LOW QUALITY PROTEIN: T-box transcription factor TBX1
Names
T-box 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051830.1 Reference ROS_Cfam_1.0

    Range
    30932031..30939925 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038437527.1 → XP_038293455.1  T-box transcription factor TBX1

    UniProtKB/TrEMBL
    A0A8I3Q145
    Related
    ENSCAFP00845040654.1, ENSCAFT00845051812.1
    Conserved Domains (1) summary
    cd20187
    Location:156 → 343
    T-box_TBX1_10-like; DNA-binding domain of T-box transcription factor 1 and 10, and related T-box proteifactors

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049286.1 Alternate UMICH_Zoey_3.1

    Range
    28979960..28987853 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038512393.1 → XP_038368321.1  T-box transcription factor TBX1

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049767.1 Alternate UNSW_CanFamBas_1.0

    Range
    28605398..28613298 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038640105.1 → XP_038496033.1  LOW QUALITY PROTEIN: T-box transcription factor TBX1

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049247.1 Alternate UU_Cfam_GSD_1.0

    Range
    29690874..29698814 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038575893.1 → XP_038431821.1  T-box transcription factor TBX1

    UniProtKB/TrEMBL
    A0A8I3Q145
    Conserved Domains (1) summary
    cd20187
    Location:156 → 343
    T-box_TBX1_10-like; DNA-binding domain of T-box transcription factor 1 and 10, and related T-box proteifactors

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006608.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    29486387..29494624 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038459380.1 → XP_038315308.1  T-box transcription factor TBX1

    UniProtKB/TrEMBL
    A0A8C0NVF1, A0A8P0NGC9
    Conserved Domains (1) summary
    cd20187
    Location:156 → 343
    T-box_TBX1_10-like; DNA-binding domain of T-box transcription factor 1 and 10, and related T-box proteifactors
Nucleotide Protein
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