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mrps7 mitochondrial ribosomal protein S7 [ Danio rerio (zebrafish) ]

Gene ID: 619204, updated on 27-Mar-2024

Summary

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Official Symbol
mrps7provided by ZNC
Official Full Name
mitochondrial ribosomal protein S7provided by ZNC
Primary source
ZFIN:ZDB-GENE-050809-112
See related
Ensembl:ENSDARG00000101622 AllianceGenome:ZFIN:ZDB-GENE-050809-112
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:110673
Summary
Predicted to enable mRNA binding activity and rRNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in mitochondrial translation and ribosomal small subunit assembly. Predicted to be located in mitochondrion. Predicted to be part of mitochondrial small ribosomal subunit. Predicted to be active in ribosome. Human ortholog(s) of this gene implicated in combined oxidative phosphorylation deficiency 34. Orthologous to human MRPS7 (mitochondrial ribosomal protein S7). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
human mouse all
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Genomic context

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See mrps7 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
5
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 3 NC_007114.7 (11073076..11075476)
105 previous assembly GRCz10 (GCF_000002035.5) 3 NC_007114.6 (11106533..11108933)

Chromosome 3 - NC_007114.7Genomic Context describing neighboring genes Neighboring gene butyrophilin-like protein 2 Neighboring gene butyrophilin-like protein 2 Neighboring gene MIF4G domain containing b Neighboring gene somatostatin receptor 5

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Exploration of anti-inflammatory mechanism of forsythiaside A and forsythiaside B in CuSO(4)-induced inflammation in zebrafish by metabolomic and proteomic analyses. Gong L, et al. J Neuroinflammation, 2020 Jun 3. PMID 32493433, Free PMC Article
  2. Evolution of complexity in the zebrafish synapse proteome. Bayés À, et al. Nat Commun, 2017 Mar 2. PMID 28252024, Free PMC Article
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  5. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Markers

Homology

Clone Names

  • MGC110673

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables mRNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables rRNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables structural constituent of ribosome IBA
Inferred from Biological aspect of Ancestor
more info
  
enables structural constituent of ribosome ISS
Inferred from Sequence or Structural Similarity
more info
  
Process Evidence Code Pubs
involved_in mitochondrial translation ISS
Inferred from Sequence or Structural Similarity
more info
  
involved_in ribosomal small subunit assembly IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in translation IBA
Inferred from Biological aspect of Ancestor
more info
  
acts_upstream_of_or_within translation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of mitochondrial small ribosomal subunit IBA
Inferred from Biological aspect of Ancestor
more info
  
part_of mitochondrial small ribosomal subunit ISS
Inferred from Sequence or Structural Similarity
more info
  
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
  
part_of ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
  
is_active_in ribosome IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in ribosome IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
small ribosomal subunit protein uS7m
Names
28S ribosomal protein S7, mitochondrial
MRP-S7
S7mt
NP_001028768.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001033596.1 → NP_001028768.1  small ribosomal subunit protein uS7m precursor

    See identical proteins and their annotated locations for NP_001028768.1

    Status: PROVISIONAL

    Source sequence(s)
    BC100013
    UniProtKB/Swiss-Prot
    Q498Z6
    Related
    ENSDARP00000135472.1, ENSDART00000158899.2
    Conserved Domains (1) summary
    cd14870
    Location:22 → 226
    uS7_Mitochondria_Mammalian; Mammalian Mitochondrial homolog of Ribosomal Protein S7

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007114.7 Reference GRCz11 Primary Assembly

    Range
    11073076..11075476
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q498Z6.1 GenPept UniProtKB/Swiss-Prot:Q498Z6

Gene LinkOut

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