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zgc:123103 zgc:123103 [ Danio rerio (zebrafish) ]

Gene ID: 641325, updated on 2-Nov-2024

Summary

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Official Symbol
zgc:123103provided by ZNC
Official Full Name
zgc:123103provided by ZNC
Primary source
ZFIN:ZDB-GENE-051030-105
See related
Ensembl:ENSDARG00000099200 AllianceGenome:ZFIN:ZDB-GENE-051030-105
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:158580
Summary
Is expressed in liver. [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
all
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Genomic context

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See zgc:123103 in Genome Data Viewer
Location:
chromosome: 19
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 19 NC_007130.7 (42547685..42551338, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 19 NC_007130.6 (42978262..42981843, complement)

Chromosome 19 - NC_007130.7Genomic Context describing neighboring genes Neighboring gene si:dkey-166k12.1 Neighboring gene zgc:110239 Neighboring gene uncharacterized LOC137488550 Neighboring gene si:dkey-267n13.1 Neighboring gene si:dkey-228a15.1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Molecular conservation of estrogen-response associated with cell cycle regulation, hormonal carcinogenesis and cancer in zebrafish and human cancer cell lines. Lam SH, et al. BMC Med Genomics, 2011 May 16. PMID 21575170, Free PMC Article
  2. Genome-wide identification of molecular pathways and biomarkers in response to arsenic exposure in zebrafish liver. Xu H, et al. PLoS One, 2013. PMID 23922661, Free PMC Article
  3. Cdx1b protects intestinal cell fate by repressing signaling networks for liver specification. Jin Q, et al. J Genet Genomics, 2022 Dec. PMID 36460297
  4. Unraveling Differential Transcriptomes and Cell Types in Zebrafish Larvae Intestine and Liver. Gao Y, et al. Cells, 2022 Oct 19. PMID 36291156, Free PMC Article
  5. Transcriptomic analyses of sexual dimorphism of the zebrafish liver and the effect of sex hormones. Zheng W, et al. PLoS One, 2013. PMID 23349717, Free PMC Article

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Clone Names

  • MGC123103

General protein information

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Preferred Names
uncharacterized protein LOC641325

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001037120.2 → NP_001032197.2  uncharacterized protein LOC641325 precursor

    Status: VALIDATED

    Source sequence(s)
    BX950855
    UniProtKB/TrEMBL
    A8E4Z6, Q3B7G2
    Related
    ENSDARP00000135286.1, ENSDART00000162837.2
    Conserved Domains (1) summary
    smart00848
    Location:241 → 296
    Inhibitor_I29; Cathepsin propeptide inhibitor domain (I29)

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007130.7 Reference GRCz11 Primary Assembly

    Range
    42547685..42551338 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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