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zgc:123010 zgc:123010 [ Danio rerio (zebrafish) ]

Gene ID: 641500, updated on 2-Nov-2024

Summary

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Official Symbol
zgc:123010provided by ZNC
Official Full Name
zgc:123010provided by ZNC
Primary source
ZFIN:ZDB-GENE-051120-15
See related
Ensembl:ENSDARG00000039082 AllianceGenome:ZFIN:ZDB-GENE-051120-15
Gene type
protein coding
RefSeq status
PREDICTED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fk11h08; wu:fk11h08
Summary
Predicted to enable RNA binding activity and metal ion binding activity. Is expressed in telencephalon. Orthologous to human TTC31 (tetratricopeptide repeat domain 31). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
all
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Genomic context

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See zgc:123010 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
17
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 13 NC_007124.7 (40247377..40282961, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 13 NC_007124.6 (40121487..40157074, complement)

Chromosome 13 - NC_007124.7Genomic Context describing neighboring genes Neighboring gene cartilage acidic protein 1b Neighboring gene uncharacterized LOC137487433 Neighboring gene lysyl oxidase-like 4 Neighboring gene pyridine nucleotide-disulphide oxidoreductase domain 2 Neighboring gene solute carrier family 25 member 28

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Characterization of zebrafish (Danio rerio) muscle ankyrin repeat proteins reveals their conserved response to endurance exercise. Boskovic S, et al. PLoS One, 2018. PMID 30252882, Free PMC Article
  2. Comprehensive expression map of transcription regulators in the adult zebrafish telencephalon reveals distinct neurogenic niches. Diotel N, et al. J Comp Neurol, 2015 Jun 1. PMID 25556858, Free PMC Article
  3. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Clone Names

  • MGC123010

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables molecular_function ND
No biological Data available
more info
  
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
uncharacterized protein LOC641500

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001145554.1 → NP_001139026.1  uncharacterized protein LOC641500

    Status: PREDICTED

    Source sequence(s)
    CU462910
    UniProtKB/TrEMBL
    A0A8M1NRF0, B8JL34
    Related
    ENSDARP00000113359.1, ENSDART00000140875.3
    Conserved Domains (6) summary
    smart00360
    Location:343 → 409
    RRM; RNA recognition motif
    COG0724
    Location:337 → 411
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    sd00006
    Location:187 → 212
    TPR; TPR repeat [structural motif]
    pfam00642
    Location:444 → 465
    zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)
    pfam07719
    Location:252 → 282
    TPR_2; Tetratricopeptide repeat
    pfam13414
    Location:187 → 249
    TPR_11; TPR repeat

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007124.7 Reference GRCz11 Primary Assembly

    Range
    40247377..40282961 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009307532.4 → XP_009305807.1  uncharacterized protein LOC641500 isoform X5

    UniProtKB/TrEMBL
    A0A8M3AZD6
    Conserved Domains (6) summary
    smart00360
    Location:366 → 432
    RRM; RNA recognition motif
    COG0724
    Location:360 → 434
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    sd00006
    Location:210 → 235
    TPR; TPR repeat [structural motif]
    pfam00642
    Location:467 → 488
    zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)
    pfam07719
    Location:275 → 305
    TPR_2; Tetratricopeptide repeat
    pfam13414
    Location:210 → 272
    TPR_11; TPR repeat

  2. XM_068212931.1 → XP_068069032.1  uncharacterized protein LOC641500 isoform X4

  3. XM_068212932.1 → XP_068069033.1  uncharacterized protein LOC641500 isoform X7

  4. XM_068212930.1 → XP_068069031.1  uncharacterized protein LOC641500 isoform X3

  5. XM_009307531.4 → XP_009305806.1  uncharacterized protein LOC641500 isoform X6

    UniProtKB/TrEMBL
    A0A8M3BEU4
    Conserved Domains (6) summary
    smart00360
    Location:368 → 434
    RRM; RNA recognition motif
    COG0724
    Location:362 → 436
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    sd00006
    Location:212 → 237
    TPR; TPR repeat [structural motif]
    pfam00642
    Location:469 → 490
    zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)
    pfam07719
    Location:277 → 307
    TPR_2; Tetratricopeptide repeat
    pfam13414
    Location:212 → 274
    TPR_11; TPR repeat

  6. XM_068212929.1 → XP_068069030.1  uncharacterized protein LOC641500 isoform X2

  7. XM_068212928.1 → XP_068069029.1  uncharacterized protein LOC641500 isoform X1

Nucleotide Protein Strain
Heading Accession and Version

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