zgc:136858 zgc:136858 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: zgc:136858provided by ZNC
Official Full Name: zgc:136858provided by ZNC
Primary source: ZFIN:ZDB-GENE-060421-6632
See related: Ensembl:ENSDARG00000070830 AllianceGenome:ZFIN:ZDB-GENE-060421-6632
Gene type: protein coding
RefSeq status: PREDICTED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: fb68f01; wu:fb68f01
Summary: Predicted to enable pseudouridylate synthase activity. Predicted to be involved in nucleoside phosphate metabolic process. Predicted to act upstream of or within phosphorylation. Predicted to be active in cytoplasm. [provided by Alliance of Genome Resources, Nov 2024]
Orthologs: all
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Genomic context

Location:: chromosome: 25

Exon count:: 18

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	25	NC_007136.7 (20027086..20049502, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	25	NC_007136.6 (19929432..19951845, complement)

Chromosome 25 - NC_007136.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables hydrolase activity	IEA Inferred from Electronic Annotation more info
enables hydrolase activity, acting on glycosyl bonds	IEA Inferred from Electronic Annotation more info
enables kinase activity	IEA Inferred from Electronic Annotation more info
enables lyase activity	IEA Inferred from Electronic Annotation more info
enables metal ion binding	IEA Inferred from Electronic Annotation more info
enables pseudouridylate synthase activity	IBA Inferred from Biological aspect of Ancestor more info
enables pseudouridylate synthase activity	IEA Inferred from Electronic Annotation more info
enables transferase activity	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in nucleoside phosphate metabolic process	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within phosphorylation	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
is_active_in cellular_component	ND No biological Data available more info
is_active_in cytoplasm	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: uncharacterized protein LOC678543

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001040302.1 → NP_001035392.1 uncharacterized protein LOC678543

See identical proteins and their annotated locations for NP_001035392.1

Status: PREDICTED

Source sequence(s)

BC115294

UniProtKB/TrEMBL

Q1RLT6

Related

ENSDARP00000095090.3, ENSDART00000104315.5

Conserved Domains (2) summary

cd01941
Location:351 → 668

YeiC_kinase_like; YeiC-like sugar kinase. Found in eukaryotes and bacteria, YeiC-like kinase is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.

pfam04227
Location:33 → 322

Indigoidine_A; Indigoidine synthase A like protein

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

NC_007136.7 Reference GRCz11 Primary Assembly

Range

20027086..20049502 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_009298013.3 → XP_009296288.1 uncharacterized protein LOC678543 isoform X1

UniProtKB/TrEMBL

A0A8M3AP46

Conserved Domains (2) summary

cd01941
Location:351 → 667

YeiC_kinase_like; YeiC-like sugar kinase. Found in eukaryotes and bacteria, YeiC-like kinase is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.

pfam04227
Location:33 → 322

Indigoidine_A; Indigoidine synthase A like protein