zgc:136439 zgc:136439 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: zgc:136439provided by ZNC
Official Full Name: zgc:136439provided by ZNC
Primary source: ZFIN:ZDB-GENE-060421-2858
See related: Ensembl:ENSDARG00000009267 AllianceGenome:ZFIN:ZDB-GENE-060421-2858
Gene type: protein coding
RefSeq status: PREDICTED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: zgc:123083; si:dz211o13.10; si:busm1-211o13.10
Summary: Predicted to act upstream of or within biosynthetic process. [provided by Alliance of Genome Resources, Nov 2024]
Orthologs: all
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Genomic context

Location:: chromosome: 9

Exon count:: 8

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	9	NC_007120.7 (41080092..41083181)
105	previous assembly	GRCz10 (GCF_000002035.5)	9	NC_007120.6 (41278305..41281394)

Chromosome 9 - NC_007120.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Process	Evidence Code	Pubs
acts_upstream_of_or_within biosynthetic process	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
is_active_in cellular_component	ND No biological Data available more info

General protein information

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Preferred Names: uncharacterized protein LOC678627

Names: thymidylyltransferase

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001040372.1 → NP_001035462.1 uncharacterized protein LOC678627

See identical proteins and their annotated locations for NP_001035462.1

Status: PREDICTED

Source sequence(s)

BC115133

UniProtKB/TrEMBL

A0A8M1N8W0, Q1RM52

Related

ENSDARP00000019928.4, ENSDART00000019289.6

Conserved Domains (2) summary

COG1208
Location:1 → 269

GCD1; NDP-sugar pyrophosphorylase, includes eIF-2Bgamma, eIF-2Bepsilon, and LPS biosynthesis proteins [Translation, ribosomal structure and biogenesis, Cell wall/membrane/envelope biogenesis]

cl11394
Location:3 → 250

Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold