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Cdhr4 cadherin-related family member 4 [ Mus musculus (house mouse) ]

Gene ID: 69398, updated on 13-Jan-2025

Summary

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Official Symbol
Cdhr4provided by MGI
Official Full Name
cadherin-related family member 4provided by MGI
Primary source
MGI:MGI:1916648
See related
Ensembl:ENSMUSG00000032595 AllianceGenome:MGI:1916648
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Cdh29
Summary
Predicted to be involved in cell adhesion. Predicted to be active in plasma membrane. Orthologous to human CDHR4 (cadherin related family member 4). [provided by Alliance of Genome Resources, Jan 2025]
Expression
Biased expression in testis adult (RPKM 36.0), ovary adult (RPKM 21.9) and 4 other tissues See more
Orthologs
human all
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Genomic context

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See Cdhr4 in Genome Data Viewer
Location:
9 F1; 9 59.07 cM
Exon count:
19
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 9 NC_000075.7 (107869656..107876880)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 9 NC_000075.6 (107992457..107999681)

Chromosome 9 - NC_000075.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E3858 Neighboring gene CapStarr-seq enhancer MGSCv37_chr9:107878063-107878250 Neighboring gene STARR-positive B cell enhancer ABC_E2913 Neighboring gene ubiquitin-like modifier activating enzyme 7 Neighboring gene inka box actin regulator 1 Neighboring gene RIKEN cDNA 4930535L15 gene Neighboring gene STARR-positive B cell enhancer ABC_E61 Neighboring gene inositol hexaphosphate kinase 1 Neighboring gene STARR-positive B cell enhancer ABC_E2305 Neighboring gene STARR-positive B cell enhancer ABC_E6803 Neighboring gene GDP-mannose pyrophosphorylase B Neighboring gene ring finger protein 123

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Evaluation of somatic alterations of Pcdh-alpha transcripts in the brain by cDNA analysis without PCR. Hirayama T, et al. Genes Cells, 2006 Jan. PMID 16371135
  2. A comparison of whole-genome shotgun-derived mouse chromosome 16 and the human genome. Mural RJ, et al. Science, 2002 May 31. PMID 12040188
  3. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, et al. Development, 2000 Apr. PMID 10725249
  4. BGEM: an in situ hybridization database of gene expression in the embryonic and adult mouse nervous system. Magdaleno S, et al. PLoS Biol, 2006 Apr. PMID 16602821, Free PMC Article
  5. Libraries enriched for alternatively spliced exons reveal splicing patterns in melanocytes and melanomas. Watahiki A, et al. Nat Methods, 2004 Dec. PMID 15782199

See all (18) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. constructed cDNA libraries from the mouse cerebral cortex without using pcr.
    Title: Evaluation of somatic alterations of Pcdh-alpha transcripts in the brain by cDNA analysis without PCR.
Submit: New GeneRIF Correction

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

General gene information

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Markers

Potential readthrough

Included gene: Uba7

Potential readthrough

Included gene: Ip6k1

Homology

Clone Names

  • MGC144383, MGC144384, 1700021K14Rik, D330022A01Rik

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in cell adhesion IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
cadherin-related family member 4
Names
cadherin-like 29

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001378391.1 → NP_001365320.1  cadherin-related family member 4 precursor

    Status: VALIDATED

    Source sequence(s)
    AL731808
    UniProtKB/TrEMBL
    H3BJZ2
    Related
    ENSMUSP00000135184.2, ENSMUST00000177173.8
    Conserved Domains (1) summary
    cd11304
    Location:441 → 540
    Cadherin_repeat; Cadherin tandem repeat domain

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000075.7 Reference GRCm39 C57BL/6J

    Range
    107869656..107876880
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001122635.1: Suppressed sequence

    Description
    NM_001122635.1: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript and the protein.

  2. NM_177090.4: Suppressed sequence

    Description
    NM_177090.4: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript and the protein.
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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