znf740b zinc finger protein 740b [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: znf740bprovided by ZNC
Official Full Name: zinc finger protein 740bprovided by ZNC
Primary source: ZFIN:ZDB-GENE-060929-660
See related: Ensembl:ENSDARG00000061174 AllianceGenome:ZFIN:ZDB-GENE-060929-660
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: znf740; zgc:153696
Summary: Predicted to enable DNA-binding transcription factor activity and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Orthologous to human ZNF740 (zinc finger protein 740). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 23

Exon count:: 7

Annotation release	Status	Assembly	Chr	Location
106	current	GRCz11 (GCF_000002035.6)	23	NC_007134.7 (36401456..36418050, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	23	NC_007134.6 (36302738..36319252, complement)

Chromosome 23 - NC_007134.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables DNA-binding transcription factor activity	IBA Inferred from Biological aspect of Ancestor more info
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding	IBA Inferred from Biological aspect of Ancestor more info
enables metal ion binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in regulation of transcription by RNA polymerase II	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
located_in nucleus	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: zinc finger protein 740; zinc finger protein 740b

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001076631.2 → NP_001070099.2 zinc finger protein 740b precursor

Status: VALIDATED

Source sequence(s)

CU468730

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

NC_007134.7 Reference GRCz11 Primary Assembly

Range

36401456..36418050 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_021469848.1 → XP_021325523.1 zinc finger protein 740 isoform X1

UniProtKB/TrEMBL

A0A8M2B9H4, F1QPP4

Related

ENSDARP00000113405.1, ENSDART00000132273.4

Conserved Domains (1) summary

sd00017
Location:140 → 160

ZF_C2H2; C2H2 Zn finger [structural motif]
XM_005162390.4 → XP_005162447.1 zinc finger protein 740 isoform X1

See identical proteins and their annotated locations for XP_005162447.1

UniProtKB/TrEMBL

A0A8M2B9H4, F1QPP4

Conserved Domains (1) summary

sd00017
Location:140 → 160

ZF_C2H2; C2H2 Zn finger [structural motif]
XM_005162391.4 → XP_005162448.1 zinc finger protein 740 isoform X2

See identical proteins and their annotated locations for XP_005162448.1

UniProtKB/TrEMBL

Q08C35

Conserved Domains (2) summary

sd00017
Location:113 → 133

ZF_C2H2; C2H2 Zn finger [structural motif]

pfam13465
Location:153 → 178

zf-H2C2_2; Zinc-finger double domain