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zgc:152938 zgc:152938 [ Danio rerio (zebrafish) ]

Gene ID: 768145, updated on 12-Sep-2024

Summary

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Official Symbol
zgc:152938provided by ZNC
Official Full Name
zgc:152938provided by ZNC
Primary source
ZFIN:ZDB-GENE-061013-458
See related
Ensembl:ENSDARG00000102586 AllianceGenome:ZFIN:ZDB-GENE-061013-458
Gene type
protein coding
RefSeq status
PREDICTED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary
Predicted to enable DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be part of transcription regulator complex. Predicted to be active in nucleus. [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
all
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Genomic context

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See zgc:152938 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 4 NC_007115.7 (73049100..73064999)
105 previous assembly GRCz10 (GCF_000002035.5) 4 NC_007115.6 (71390387..71405841)

Chromosome 4 - NC_007115.7Genomic Context describing neighboring genes Neighboring gene zinc finger protein OZF Neighboring gene gastrula zinc finger protein XlCGF57.1 Neighboring gene zinc finger protein 260-like Neighboring gene zinc finger protein 239-like Neighboring gene si:ch73-170d6.2 Neighboring gene si:ch73-170d6.3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  3. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  
part_of transcription regulator complex IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
uncharacterized protein LOC768145

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001077288.1 → NP_001070756.1  uncharacterized protein LOC768145

    See identical proteins and their annotated locations for NP_001070756.1

    Status: PREDICTED

    Source sequence(s)
    BC124607
    UniProtKB/TrEMBL
    Q08BQ9
    Related
    ENSDARP00000143198.1, ENSDART00000174219.2
    Conserved Domains (2) summary
    pfam02944
    Location:226 → 260
    BESS; BESS motif
    pfam10545
    Location:60 → 128
    MADF_DNA_bdg; Alcohol dehydrogenase transcription factor Myb/SANT-like

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007115.7 Reference GRCz11 Primary Assembly

    Range
    73049100..73064999
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005174390.5 → XP_005174447.1  uncharacterized protein LOC768145 isoform X1

    UniProtKB/TrEMBL
    A0A0R4IGU7, A0A8M2BLM8
    Conserved Domains (2) summary
    pfam02944
    Location:226 → 260
    BESS; BESS motif
    pfam10545
    Location:60 → 128
    MADF_DNA_bdg; Alcohol dehydrogenase transcription factor Myb/SANT-like
Nucleotide Protein
Heading Accession and Version

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