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hpf ribosome hibernation promotion factor [ Bacillus inaquosorum ]

Gene ID: 76980015, updated on 22-Apr-2024

Summary

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Gene symbol
hpf
Gene description
ribosome hibernation promotion factor
Locus tag
M1M80_RS18340
Gene type
protein coding
Organism
Bacillus inaquosorum (strain: A65.1, nat-host: Glycyrrhiza uralensis Fisch)
Lineage
Bacteria; Bacillota; Bacilli; Bacillales; Bacillaceae; Bacillus
Also known as
yvyD
Old locus tag
M1M80_18340
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Genomic context

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NZ_CP096592.1Genomic Context describing neighboring genes Neighboring gene peptide chain release factor 2 Neighboring gene preprotein translocase subunit SecA Neighboring gene hypothetical protein Neighboring gene flagellar protein FliT Neighboring gene flagellar export chaperone FliS

Genomic regions, transcripts, and products

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Genomic Sequence:
NZ_CP096592.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization. Beckert B, et al. EMBO J, 2017 Jul 14. PMID 28468753, Free PMC Article
  2. The glucose and nitrogen starvation response of Bacillus licheniformis. Voigt B, et al. Proteomics, 2007 Feb. PMID 17274076
  3. Bacillus subtilis functional genomics: global characterization of the stringent response by proteome and transcriptome analysis. Eymann C, et al. J Bacteriol, 2002 May. PMID 11948165, Free PMC Article
  4. The yvyD gene of Bacillus subtilis is under dual control of sigmaB and sigmaH. Drzewiecki K, et al. J Bacteriol, 1998 Dec. PMID 9852014, Free PMC Article
  5. Expression of a small (p)ppGpp synthetase, YwaC, in the (p)ppGpp(0) mutant of Bacillus subtilis triggers YvyD-dependent dimerization of ribosome. Tagami K, et al. Microbiologyopen, 2012 Jun. PMID 22950019, Free PMC Article

GeneRIFs: Gene References Into Functions

General protein information

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Preferred Names
ribosome hibernation promotion factor

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NZ_CP096592.1 Reference assembly

    Range
    3615482..3616051 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. WP_003235436.1 MULTISPECIES: ribosome hibernation promotion factor [Bacillus]

    See identical proteins and their annotated locations for WP_003235436.1

    UniProtKB/TrEMBL
    A0A2M8SVB9, A0A9Q4EU88, A0A9W5LL72
    Conserved Domains (2) summary
    COG1544
    Location:1 → 111
    RaiA; Ribosome-associated translation inhibitor RaiA [Translation, ribosomal structure and biogenesis]
    pfam16321
    Location:133 → 184
    Ribosom_S30AE_C; Sigma 54 modulation/S30EA ribosomal protein C-terminus
Nucleotide Protein
Heading Accession and Version