U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

pgp phosphoglycolate phosphatase [ Danio rerio (zebrafish) ]

Gene ID: 792824, updated on 12-Sep-2024

Summary

Go to the top of the page Help
Official Symbol
pgpprovided by ZNC
Official Full Name
phosphoglycolate phosphataseprovided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-6240
See related
Ensembl:ENSDARG00000029695 AllianceGenome:ZFIN:ZDB-GENE-030131-6240
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
cb241; sb:cb241; zgc:56011; wu:fb92c03; wu:fi40b02
Summary
Predicted to enable glycerol-3-phosphatase activity. Predicted to be active in cytoplasm. Is expressed in adaxial cell; otic placode; and somite. Orthologous to human PGP (phosphoglycolate phosphatase). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See pgp in Genome Data Viewer
Location:
chromosome: 12
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 12 NC_007123.7 (18565553..18568847, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 12 NC_007123.6 (18443679..18446973, complement)

Chromosome 12 - NC_007123.7Genomic Context describing neighboring genes Neighboring gene meiosis specific with OB-fold Neighboring gene MTOR associated protein, LST8 homolog (S. cerevisiae) Neighboring gene BRICHOS domain containing 5 Neighboring gene zinc finger DHHC-type palmitoyltransferase 4 Neighboring gene glutamate receptor, ionotropic, delta 2 (Grid2) interacting protein, b

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Ablation of Mto1 in zebrafish exhibited hypertrophic cardiomyopathy manifested by mitochondrion RNA maturation deficiency. Zhang Q, et al. Nucleic Acids Res, 2021 May 7. PMID 33836087, Free PMC Article
  2. Dhrs3a regulates retinoic acid biosynthesis through a feedback inhibition mechanism. Feng L, et al. Dev Biol, 2010 Feb 1. PMID 19874812, Free PMC Article
  3. Hematopoietic gene expression profile in zebrafish kidney marrow. Song HD, et al. Proc Natl Acad Sci U S A, 2004 Nov 16. PMID 15520368, Free PMC Article
  4. The zebrafish gene map defines ancestral vertebrate chromosomes. Woods IG, et al. Genome Res, 2005 Sep. PMID 16109975, Free PMC Article
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Markers

Homology

Clone Names

  • MGC56011

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables glycerol-1-phosphatase activity IEA
Inferred from Electronic Annotation
more info
  
enables glycerol-3-phosphatase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables hydrolase activity IEA
Inferred from Electronic Annotation
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables phosphatase activity IEA
Inferred from Electronic Annotation
more info
  
enables phosphoglycolate phosphatase activity IEA
Inferred from Electronic Annotation
more info
  
enables protein tyrosine phosphatase activity IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

Go to the top of the page Help
Preferred Names
glycerol-3-phosphate phosphatase
NP_997891.2

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_212726.2 → NP_997891.2  glycerol-3-phosphate phosphatase

    Status: VALIDATED

    Source sequence(s)
    CT009714
    UniProtKB/TrEMBL
    A0A8M1PI24, F1QGU0
    Related
    ENSDARP00000039692.6, ENSDART00000039693.7
    Conserved Domains (3) summary
    TIGR01452
    Location:21 → 300
    PGP_euk; phosphoglycolate/pyridoxal phosphate phosphatase family
    pfam13242
    Location:217 → 299
    Hydrolase_like; HAD-hyrolase-like
    pfam13344
    Location:24 → 125
    Hydrolase_6; Haloacid dehalogenase-like hydrolase

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007123.7 Reference GRCz11 Primary Assembly

    Range
    18565553..18568847 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394835.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    531937..535353 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools