si:ch211-122f10.4 si:ch211-122f10.4 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: si:ch211-122f10.4provided by ZNC
Official Full Name: si:ch211-122f10.4provided by ZNC
Primary source: ZFIN:ZDB-GENE-140106-45
See related: Ensembl:ENSDARG00000052074 AllianceGenome:ZFIN:ZDB-GENE-140106-45
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: zmp:0000001085
Summary: Predicted to enable serine-type carboxypeptidase activity. Predicted to act upstream of or within proteolysis. [provided by Alliance of Genome Resources, Nov 2024]
Orthologs: all
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Genomic context

See si:ch211-122f10.4 in Genome Data Viewer

Location:: chromosome: 7

Exon count:: 11

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	7	NC_007118.7 (51816321..51825070)
105	previous assembly	GRCz10 (GCF_000002035.5)	7	NC_007118.6 (51540909..51550000)

Chromosome 7 - NC_007118.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables carboxypeptidase activity	IEA Inferred from Electronic Annotation more info
enables hydrolase activity	IEA Inferred from Electronic Annotation more info
enables peptidase activity	IEA Inferred from Electronic Annotation more info
enables serine-type carboxypeptidase activity	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within proteolysis	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: cathepsin A-like

NP_001373581.1

EC 3.4.16.-

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001386652.1 → NP_001373581.1 cathepsin A-like precursor

Status: VALIDATED

Source sequence(s)

BX957362

UniProtKB/TrEMBL

A0A8M1PU30, F1QYP6

Related

ENSDARP00000068336.3, ENSDART00000073846.5

Conserved Domains (1) summary

pfam00450
Location:31 → 454

Peptidase_S10; Serine carboxypeptidase