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npdc1a neural proliferation, differentiation and control, 1a [ Danio rerio (zebrafish) ]

Gene ID: 794093, updated on 2-Nov-2024

Summary

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Official Symbol
npdc1aprovided by ZNC
Official Full Name
neural proliferation, differentiation and control, 1aprovided by ZNC
Primary source
ZFIN:ZDB-GENE-031204-31
See related
Ensembl:ENSDARG00000074697 AllianceGenome:ZFIN:ZDB-GENE-031204-31
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
npdc1; sb:cb1030; zgc:194693
Summary
Predicted to be located in membrane. Is expressed in endocrine system; hatching gland; midbrain; polster; and retina. Orthologous to human NPDC1 (neural proliferation, differentiation and control 1). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
all
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Genomic context

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See npdc1a in Genome Data Viewer
Location:
chromosome: 21
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 21 NC_007132.7 (13702566..13751378, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 21 NC_007132.6 (13605837..13654649, complement)

Chromosome 21 - NC_007132.7Genomic Context describing neighboring genes Neighboring gene fucosyltransferase 7 (alpha (1,3) fucosyltransferase) Neighboring gene POU domain, class 5, transcription factor 3 Neighboring gene si:ch211-282j22.3 Neighboring gene solute carrier family 31 member 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. The evolution of class V POU domain transcription factors in vertebrates and their characterisation in a marsupial. Frankenberg S, et al. Dev Biol, 2010 Jan 1. PMID 19850032
  2. Characterization of the POU5F1 Homologue in Nile Tilapia: From Expression Pattern to Biological Activity. Xiaohuan H, et al. Stem Cells Dev, 2016 Sep 15. PMID 27473876
  3. Medaka Oct4 is essential for pluripotency in blastula formation and ES cell derivation. Liu R, et al. Stem Cell Rev Rep, 2015 Feb. PMID 25142379
  4. Transcriptome analysis reveals positive selection on the divergent between topmouth culter and zebrafish. Ren L, et al. Gene, 2014 Dec 1. PMID 25267534
  5. Hematopoietic gene expression profile in zebrafish kidney marrow. Song HD, et al. Proc Natl Acad Sci U S A, 2004 Nov 16. PMID 15520368, Free PMC Article

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
neural proliferation differentiation and control protein 1a
Names
neural proliferation, differentiation and control, 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001128783.1 → NP_001122255.1  neural proliferation differentiation and control protein 1a precursor

    See identical proteins and their annotated locations for NP_001122255.1

    Status: PROVISIONAL

    Source sequence(s)
    BC163322
    UniProtKB/TrEMBL
    B3DJ13, B3DJ18, F6NPK6
    Related
    ENSDARP00000098274.2, ENSDART00000111666.3
    Conserved Domains (1) summary
    pfam06809
    Location:5 → 300
    NPDC1; Neural proliferation differentiation control-1 protein (NPDC1)

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007132.7 Reference GRCz11 Primary Assembly

    Range
    13702566..13751378 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

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