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stk11ip serine/threonine kinase 11 interacting protein [ Danio rerio (zebrafish) ]

Gene ID: 795019, updated on 2-Nov-2024

Summary

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Official Symbol
stk11ipprovided by ZNC
Official Full Name
serine/threonine kinase 11 interacting proteinprovided by ZNC
Primary source
ZFIN:ZDB-GENE-040426-1022
See related
Ensembl:ENSDARG00000070122 AllianceGenome:ZFIN:ZDB-GENE-040426-1022
Gene type
protein coding
RefSeq status
INFERRED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:56417
Summary
Predicted to enable kinase activity. Predicted to be involved in protein localization. Predicted to act upstream of or within phosphorylation. Predicted to be active in cytoplasm. Orthologous to human STK11IP (serine/threonine kinase 11 interacting protein). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
human mouse all
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Genomic context

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See stk11ip in Genome Data Viewer
Location:
chromosome: 6
Exon count:
26
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 6 NC_007117.7 (20954401..20997767)
105 previous assembly GRCz10 (GCF_000002035.5) 6 NC_007117.6 (18894173..18937542)

Chromosome 6 - NC_007117.7Genomic Context describing neighboring genes Neighboring gene insulin-like growth factor binding protein 5a Neighboring gene insulin-like growth factor binding protein 2a Neighboring gene gap junction protein gamma 4a.1 Neighboring gene si:dkey-91f15.8

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Markers

Homology

Clone Names

  • MGC56417

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables kinase activity IEA
Inferred from Electronic Annotation
more info
  
enables transferase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within phosphorylation IEA
Inferred from Electronic Annotation
more info
  
involved_in protein localization IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
serine/threonine-protein kinase 11-interacting protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_200288.2 → NP_956582.2  serine/threonine-protein kinase 11-interacting protein

    Status: INFERRED

    Source sequence(s)
    BX321894, CU694369
    UniProtKB/TrEMBL
    A0A0R4IIP9, A0A8M1PB23
    Related
    ENSDARP00000134690.2, ENSDART00000165806.2
    Conserved Domains (4) summary
    cd00116
    Location:110 → 286
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    sd00033
    Location:166 → 188
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:210 → 268
    LRR_8; Leucine rich repeat
    pfam15904
    Location:6 → 95
    LIP1; LKB1 serine/threonine kinase interacting protein 1

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007117.7 Reference GRCz11 Primary Assembly

    Range
    20954401..20997767
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005166228.5 → XP_005166285.1  serine/threonine-protein kinase 11-interacting protein isoform X1

    UniProtKB/TrEMBL
    A0A8M2BDQ2, F1Q5L2
    Related
    ENSDARP00000119375.2, ENSDART00000143248.4
    Conserved Domains (4) summary
    cd00116
    Location:110 → 273
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    sd00033
    Location:166 → 188
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:210 → 268
    LRR_8; Leucine rich repeat
    pfam15904
    Location:6 → 95
    LIP1; LKB1 serine/threonine kinase interacting protein 1

  2. XM_021476945.2 → XP_021332620.1  serine/threonine-protein kinase 11-interacting protein isoform X2

    UniProtKB/TrEMBL
    A0A8M9QFK4
    Conserved Domains (3) summary
    COG4886
    Location:20 → 278
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00031
    Location:166 → 188
    LRR_1; leucine-rich repeat [structural motif]
    pfam15904
    Location:6 → 95
    LIP1; LKB1 serine/threonine kinase interacting protein 1

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394633.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    175240..218638
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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