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ifi44d interferon-induced protein 44d [ Danio rerio (zebrafish) ]

Gene ID: 795887, updated on 17-Sep-2024

Summary

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Official Symbol
ifi44dprovided by ZNC
Official Full Name
interferon-induced protein 44dprovided by ZNC
Primary source
ZFIN:ZDB-GENE-200128-2
See related
Ensembl:ENSDARG00000010729 AllianceGenome:ZFIN:ZDB-GENE-200128-2
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
ifi44l
Orthologs
all
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Genomic context

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See ifi44d in Genome Data Viewer
Location:
chromosome: 10
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 10 NC_007121.7 (4371493..4375194, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 10 NC_007121.6 (4347675..4351821, complement)

Chromosome 10 - NC_007121.7Genomic Context describing neighboring genes Neighboring gene phospholipid phosphatase related 1 Neighboring gene glutamate receptor, ionotropic, N-methyl-D-aspartate 3A Neighboring gene microRNA 430a-1 Neighboring gene polo-like kinase 2a (Drosophila)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. IFN-Stimulated Genes in Zebrafish and Humans Define an Ancient Arsenal of Antiviral Immunity. Levraud JP, et al. J Immunol, 2019 Dec 15. PMID 31732531
  2. Contrasted innate responses to two viruses in zebrafish: insights into the ancestral repertoire of vertebrate IFN-stimulated genes. Briolat V, et al. J Immunol, 2014 May 1. PMID 24683187
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  4. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

General protein information

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Preferred Names
uncharacterized protein LOC795887
Names
interferon-induced protein 44

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001386619.1 → NP_001373548.1  uncharacterized protein LOC795887

    Status: VALIDATED

    Source sequence(s)
    CABZ01073795
    UniProtKB/TrEMBL
    F1R223
    Related
    ENSDARP00000022947.7, ENSDART00000016102.8
    Conserved Domains (1) summary
    cl38936
    Location:19 → 102
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007121.7 Reference GRCz11 Primary Assembly

    Range
    4371493..4375194 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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