slc7a4 solute carrier family 7 member 4 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: slc7a4provided by ZNC
Official Full Name: solute carrier family 7 member 4provided by ZNC
Primary source: ZFIN:ZDB-GENE-030919-2
See related: Ensembl:ENSDARG00000068286 AllianceGenome:ZFIN:ZDB-GENE-030919-2
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: si:dz266f07.3; si:busm1-266f07.3
Summary: Predicted to enable amino acid transmembrane transporter activity. Predicted to be involved in amino acid transport. Predicted to act upstream of or within transmembrane transport. Predicted to be located in membrane. Predicted to be active in plasma membrane. Orthologous to human SLC7A4 (solute carrier family 7 member 4). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 8

Exon count:: 5

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	8	NC_007119.7 (36500243..36516383)
105	previous assembly	GRCz10 (GCF_000002035.5)	8	NC_007119.6 (36467820..36483470)

Chromosome 8 - NC_007119.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables amino acid transmembrane transporter activity	IBA Inferred from Biological aspect of Ancestor more info
enables transmembrane transporter activity	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in amino acid transport	IBA Inferred from Biological aspect of Ancestor more info
acts_upstream_of_or_within transmembrane transport	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in membrane	IEA Inferred from Electronic Annotation more info
is_active_in plasma membrane	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: cationic amino acid transporter 4

Names: solute carrier family 7 (cationic amino acid transporter, y+ system), member 4

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_194427.2 → NP_919408.2 cationic amino acid transporter 4

See identical proteins and their annotated locations for NP_919408.2

Status: PROVISIONAL

Source sequence(s)

BC134892

UniProtKB/TrEMBL

A0A8N1Z2R8, A4IG22

Related

ENSDARP00000089472.3, ENSDART00000098701.4

Conserved Domains (2) summary

TIGR00906
Location:11 → 627

2A0303; cationic amino acid transport permease

pfam13906
Location:575 → 625

AA_permease_C; C-terminus of AA_permease