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si:dkey-286j15.1 si:dkey-286j15.1 [ Danio rerio (zebrafish) ]

Gene ID: 796378, updated on 27-Mar-2024

Summary

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Official Symbol
si:dkey-286j15.1provided by ZNC
Official Full Name
si:dkey-286j15.1provided by ZNC
Primary source
ZFIN:ZDB-GENE-060503-447
See related
Ensembl:ENSDARG00000040864 AllianceGenome:ZFIN:ZDB-GENE-060503-447
Gene type
protein coding
RefSeq status
PREDICTED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Orthologs
all
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Genomic context

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See si:dkey-286j15.1 in Genome Data Viewer
Location:
chromosome: 22
Exon count:
17
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 22 NC_007133.7 (30009926..30033597)
105 previous assembly GRCz10 (GCF_000002035.5) 22 NC_007133.6 (30060688..30084388)

Chromosome 22 - NC_007133.7Genomic Context describing neighboring genes Neighboring gene dual specificity phosphatase 5 Neighboring gene si:dkey-286j15.3 Neighboring gene stonustoxin subunit beta-like Neighboring gene adducin 3 (gamma) a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Hematopoietic gene expression profile in zebrafish kidney marrow. Song HD, et al. Proc Natl Acad Sci U S A, 2004 Nov 16. PMID 15520368, Free PMC Article
  2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
uncharacterized protein LOC796378

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001126458.1 → NP_001119930.1  uncharacterized protein LOC796378

    Status: PREDICTED

    Source sequence(s)
    AL845330
    UniProtKB/TrEMBL
    A0A8M1NGT6, Q1MTG4
    Related
    ENSDARP00000119648.1, ENSDART00000142529.2
    Conserved Domains (1) summary
    cl15755
    Location:1 → 47
    SAM_superfamily; SAM (Sterile alpha motif )

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007133.7 Reference GRCz11 Primary Assembly

    Range
    30009926..30033597
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017353198.2 → XP_017208687.1  uncharacterized protein LOC796378 isoform X1

    UniProtKB/TrEMBL
    A0A8M1NGT6, Q1MTG4
    Conserved Domains (1) summary
    cl15755
    Location:1 → 47
    SAM_superfamily; SAM (Sterile alpha motif )

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018395119.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    101720..139967
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

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