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ccdc80l2 coiled-coil domain containing 80 like 2 [ Danio rerio (zebrafish) ]

Gene ID: 796417, updated on 2-Nov-2024

Summary

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Official Symbol
ccdc80l2provided by ZNC
Official Full Name
coiled-coil domain containing 80 like 2provided by ZNC
Primary source
ZFIN:ZDB-GENE-091118-63
See related
Ensembl:ENSDARG00000044695 AllianceGenome:ZFIN:ZDB-GENE-091118-63
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fb92b05; wu:fb92b05; si:ch211-147j13.2
Summary
Predicted to be involved in extracellular matrix organization and positive regulation of cell-substrate adhesion. Predicted to be located in extracellular region. Predicted to be active in basement membrane. [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
all
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Genomic context

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See ccdc80l2 in Genome Data Viewer
Location:
chromosome: 21
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 21 NC_007132.7 (19834058..19841870)
105 previous assembly GRCz10 (GCF_000002035.5) 21 NC_007132.6 (19797417..19805471)

Chromosome 21 - NC_007132.7Genomic Context describing neighboring genes Neighboring gene si:ch211-262i10.2 Neighboring gene fibroblast growth factor 10a Neighboring gene nicotinamide nucleotide transhydrogenase Neighboring gene FYN binding protein 1 b Neighboring gene multifunctional ROCO family signaling regulator 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Ccdc80-l1 Is involved in axon pathfinding of zebrafish motoneurons. Brusegan C, et al. PLoS One, 2012. PMID 22384085, Free PMC Article
  2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  4. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Process Evidence Code Pubs
involved_in extracellular matrix organization IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in positive regulation of cell-substrate adhesion IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in basement membrane IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
coiled-coil domain-containing protein 80

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007132.7 Reference GRCz11 Primary Assembly

    Range
    19834058..19841870
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001336711.8 → XP_001336747.1  coiled-coil domain-containing protein 80

    UniProtKB/TrEMBL
    A0A8M1PS53, E9QF62
    Related
    ENSDARP00000116868.1, ENSDART00000147555.2
    Conserved Domains (1) summary
    pfam13778
    Location:52 → 180
    DUF4174; Domain of unknown function (DUF4174)
Nucleotide Protein
Heading Accession and Version

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